View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_149 (Length: 261)
Name: NF8606A_low_149
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_149 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 5251170 - 5251406
Alignment:
| Q |
6 |
tttggtgttgatgttggattttatatataaaatgtttctttgctgaaagcacaaaaaacaagtgttacagcataagaatagtggtttttgtcnnnnnnnn |
105 |
Q |
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| T |
5251170 |
tttggtgttgatgttggattttatatataaaatgtttctttgcagaaagcacaaaaaacaagtgttacaacataagaatagtggtttttg---ataaaaa |
5251266 |
T |
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| Q |
106 |
nnnnnnnnnnncataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5251267 |
ataataaaataaataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaa----------ataatgcaaacaattttaacaaacaggt |
5251356 |
T |
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| Q |
206 |
tcatccatgataattttaaaacaatcgnnnnnnntatacaaaggaatgaa |
255 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5251357 |
tcatccatgataattttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
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