View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_158 (Length: 254)

Name: NF8606A_low_158
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_158
NF8606A_low_158
[»] chr1 (4 HSPs)
chr1 (7-162)||(4877259-4877429)
chr1 (7-117)||(4873019-4873129)
chr1 (7-117)||(30189939-30190049)
chr1 (111-162)||(4872957-4873008)
[»] chr8 (7 HSPs)
chr8 (7-117)||(3058377-3058487)
chr8 (7-117)||(3062678-3062788)
chr8 (9-117)||(26082911-26083019)
chr8 (111-162)||(3058315-3058366)
chr8 (111-162)||(3062616-3062667)
chr8 (111-162)||(26083030-26083081)
chr8 (111-159)||(26065168-26065216)
[»] chr6 (2 HSPs)
chr6 (7-117)||(6667972-6668082)
chr6 (111-162)||(6668093-6668144)
[»] chr4 (4 HSPs)
chr4 (7-117)||(17439412-17439522)
chr4 (7-117)||(17443714-17443824)
chr4 (111-162)||(17439533-17439584)
chr4 (111-162)||(17443835-17443886)
[»] chr3 (1 HSPs)
chr3 (52-115)||(28010300-28010363)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 4877429 - 4877259
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877429 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4877330  T
Q  107 acattaa---------------aatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    |||||||               |||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4877329 acattaaaataaaagaaaacaaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4877259  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 4873129 - 4873019
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873129 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4873030  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  4873029 acattaaaata 4873019  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 30190049 - 30189939
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30190049 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactact 30189950  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  30189949 acattaaaata 30189939  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 4873008 - 4872957
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4873008 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4872957  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 3058487 - 3058377
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058487 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3058388  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  3058387 acattaaaata 3058377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 3062788 - 3062678
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062788 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3062689  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  3062688 acattaaaata 3062678  T

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Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 26082911 - 26083019
Alignment:
Q  9 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082911 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 26083010  T
Q  109 attaaaata 117  Q
    |||||||||    
T  26083011 attaaaata 26083019  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 3058366 - 3058315
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  3058366 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 3062667 - 3062616
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  3062667 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3062616  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 26083030 - 26083081
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  26083030 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 26083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 26065168 - 26065216
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctca 159  Q
    ||||||||||||||||||| ||||    |||||||||||||||||||||    
T  26065168 taaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca 26065216  T

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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 6667972 - 6668082
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667972 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 6668071  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  6668072 acattaaaata 6668082  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 6668093 - 6668144
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6668093 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 6668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 17439412 - 17439522
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439412 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17439511  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  17439512 acattaaaata 17439522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 17443714 - 17443824
Alignment:
Q  7 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443714 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17443813  T
Q  107 acattaaaata 117  Q
    |||||||||||    
T  17443814 acattaaaata 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 17439533 - 17439584
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17439533 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 17443835 - 17443886
Alignment:
Q  111 taaaatatcacaaaatactcttgtgcacatctgaaatctcaatgtctcaaca 162  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17443835 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17443886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 28010300 - 28010363
Alignment:
Q  52 aaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaa 115  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  28010300 aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaa 28010363  T

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