View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_159 (Length: 254)
Name: NF8606A_low_159
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_159 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 11758218 - 11757989
Alignment:
| Q |
6 |
gtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagcaaaagtaagttccgatgtcgta |
105 |
Q |
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| T |
11758218 |
gtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagcaaaagtaagttccgatttcgta |
11758119 |
T |
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| Q |
106 |
caaacttctgaaacttcatcgctctcctttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaatccacacacgaagtctccgaaa |
205 |
Q |
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|||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758118 |
caaacttcagaaacttcatcgttctcttttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaatccacacacgaagtctccgaaa |
11758019 |
T |
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| Q |
206 |
ctccaacttcattctcactcctcttctcaa |
235 |
Q |
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|| |||||||||||||| |||||||||||| |
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| T |
11758018 |
cttcaacttcattctcattcctcttctcaa |
11757989 |
T |
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