View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_165 (Length: 252)
Name: NF8606A_low_165
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_165 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 28419517 - 28419683
Alignment:
| Q |
67 |
aacggcttgcaagtgtttaagagaatatatagtttcttgtgattcaagattcannnnnnnnnnnnnnnnnnnnnngtgtgtgtgatcataaatggtctat |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28419517 |
aacggcttgcaagtgtttaagagaatatatagtttcttgtgattcaagatacatctctctttcttctttctctctgtgtgtgtgatcataaatggtctat |
28419616 |
T |
|
| Q |
167 |
aaaatgtgcctgtgttatttacttatttctattttattcatgttatactttcttgatgttatgcttt |
233 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28419617 |
aaaatgtgtctgtgttatttacttatttctattttattcatgttatactttcttgatgttatacttt |
28419683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 28582670 - 28582509
Alignment:
| Q |
67 |
aacggcttgcaagtgtttaagagaatatatagtttcttgtgattcaagattcannnnnnnnnnnnnnnnnnnnnngtgtgtgtgatcataaatggtctat |
166 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28582670 |
aacggcttgcaagtgtataagagaatatatagtttcttgtgattcaagatacatctctctttcttctttctctctgtgtgtgtgatcataaatggtctat |
28582571 |
T |
|
| Q |
167 |
aaaatgtgcctgtgttatttacttatttctattttattcatgttatactttcttgatgttat |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28582570 |
aaaatgtgcttgtgttatttacttatttctattttattcatgttatactttcttgatgttat |
28582509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University