View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_166 (Length: 251)
Name: NF8606A_low_166
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_166 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3067290 - 3067055
Alignment:
| Q |
1 |
attgaatcttttacatcatactgtgcaagtaaatccaaatgctaattttagtgcatatggatcaaattttatcattgtatatttgcttcactttcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067290 |
attgaatcttttacatcatactgtgcaagtaaatccaaatgctaattttagtgcatatggatcaaattttatcattgtatatttgcttcactttcttcaa |
3067191 |
T |
|
| Q |
101 |
gcacattgagtgatcaagttgtgcttcgcttaccccaaatggtactaatttaaatcatgttgacaacatttggagatcaatagcttagagatggtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067190 |
gcacattgagtgatcaagttgtgcttcgcttaccccaaatggtactaatttaaatcatgttgacaacatttggagatcaatagcttagagatggtgaagt |
3067091 |
T |
|
| Q |
201 |
tcttctccttcaaccttgaagcaattattctgttat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067090 |
tcttctccttcaaccttgaagcaattattctgttat |
3067055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3069499 - 3069262
Alignment:
| Q |
1 |
attgaatcttttacatcatactgtgcaagtaaatccaaatgctaattttagtgcatatggatcaaattttatcattgtatatttgcttcactttcttcaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
3069499 |
attgaatcttttacatcat-ctgtgcaagtaaatccaaatgctaattttagtccatatgaatcaaattttattattgtgcatctgcttcactttcttcaa |
3069401 |
T |
|
| Q |
101 |
gcacattgagtgatcaagttgtgcttcgcttaccccaaatggtactaatttaaatcatg-------ttgacaacatttggagatcaatagcttagagatg |
193 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
3069400 |
ttacattgagtgatcaagttgtgcttcacttaccccaaatggtactaatttaaatcatgttgaatgttgacaacatttggagatcaatagcttagaaatt |
3069301 |
T |
|
| Q |
194 |
gtgaagttcttctccttcaaccttgaagcaattattctg |
232 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
3069300 |
gtgaatttcttctccttcaactttgaagcaattagtctg |
3069262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 3047811 - 3047699
Alignment:
| Q |
87 |
ttcactttcttcaagcacattgagtga--tcaagttgtgcttcgcttaccccaaatggta--ctaatttaaatcatgttgacaacatttggagatcaata |
182 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| | |||| ||| || |||||||| ||||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
3047811 |
ttcactttcttcaatcacattgagtgtggtcaagtttttcttcagttatcc-aaatggtatactaatttaaatcatgttgacagcatgtgaagatcaata |
3047713 |
T |
|
| Q |
183 |
gcttagagatggtg |
196 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
3047712 |
gcttagaaatggtg |
3047699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 32304911 - 32304853
Alignment:
| Q |
85 |
gcttcactttcttcaagcacattgagtgatcaagttgtgcttcgcttaccccaaatggt |
143 |
Q |
| |
|
|||||| ||||||||| || ||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
32304911 |
gcttcaatttcttcaatcatcttgagtggtcaagttgtgcttcacttaccacaaatggt |
32304853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University