View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_169 (Length: 251)
Name: NF8606A_low_169
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_169 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 1841338 - 1841558
Alignment:
| Q |
13 |
acactgtgaactgcttctacctctcttcactctattttgttgatttattttcatttcactcttttgattactttcatggctacgtttattattcttataa |
112 |
Q |
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| T |
1841338 |
acactgtgaactgcttctacctctcttcactccattttgttgatttattttcatttcactcttttgattactttcatggctacgtttat---tcttataa |
1841434 |
T |
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| Q |
113 |
ttaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccttgtt |
212 |
Q |
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| T |
1841435 |
ttaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccatgtt |
1841534 |
T |
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| Q |
213 |
cttgttcttgttcttgtggttgat |
236 |
Q |
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| T |
1841535 |
cttgttcttgttcttgtggttgat |
1841558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 1824138 - 1824258
Alignment:
| Q |
116 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccttgttctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| || |
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| T |
1824138 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttttacgaggaacctttttcgatttcaaaccatgttgtt |
1824237 |
T |
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| Q |
216 |
gttcttgttcttgtggttgat |
236 |
Q |
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| T |
1824238 |
gttcttgttcttgtggttgat |
1824258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 1824021 - 1824109
Alignment:
| Q |
17 |
tgtgaactgcttctacctctcttcactctat---tttgttgatttattttcatttcactcttttgattactttcatggctacgtttatt |
102 |
Q |
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|||||||||||||||||| ||||||||| || |||||||||| |||||| |||| |||||| |||||||| ||||||||||||| |
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| T |
1824021 |
tgtgaactgcttctacctttcttcactccattgatttgttgattagttttcacttcagctttttgagtactttcacggctacgtttatt |
1824109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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