View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_17 (Length: 442)
Name: NF8606A_low_17
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 13245276 - 13245691
Alignment:
| Q |
14 |
tataagctatgaaactcttacgcaaaataaaactttagtgacacatggtgaccatcactacaagaaataactgtatttctggctgtcatcagccgctgct |
113 |
Q |
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| T |
13245276 |
tataagctatgaaactcttgcgcaaaataaaactttagtgacacagggtgaccatcactacaagaaataactgtatttctggctgtcataagccgctggt |
13245375 |
T |
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| Q |
114 |
aaggccaaaaagccgtcgaaaaggaaggaatgttggcggccttctaaggatcaaggacacaccggataaatgacagtcagaaattttttggtggtttcct |
213 |
Q |
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| T |
13245376 |
aaggccaaaaagccgtcgaaaaggaaggaattttggcggccttctaaggatcaaggacacaccggataaatgacattcagaatttttttggtggtttcct |
13245475 |
T |
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| Q |
214 |
ccaatactgcaagaacattacgagggccgggttcattggtcctatacagattgttcgtggattaggactaccacaaaatttttctaatttgcatgatgta |
313 |
Q |
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| T |
13245476 |
ccaatactgcaagaacattacgagggccgggttcattggtcctatacagattgttcgtggattaggactaccataaaatttttctaaattgcatgatgta |
13245575 |
T |
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| Q |
314 |
ttgctctaactttttctaattgagaaagtatcatccttagctacgcacatcattgagcaagaaacagttaaattaaaagaaaacctcaagttgaaaacac |
413 |
Q |
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| T |
13245576 |
ttgctctaactttttctaattgagaaagtatcatccttagctacgcacatcattgagcaagaaacagttaatttaaaagaaaacttcaagtttaaaatac |
13245675 |
T |
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| Q |
414 |
ttctagttcagcatat |
429 |
Q |
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| T |
13245676 |
ttctagttcagcatat |
13245691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 13266567 - 13266638
Alignment:
| Q |
20 |
ctatgaaactcttacgcaaaataaaactttagtgacacatggtgaccatcactacaagaaataactgtattt |
91 |
Q |
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| T |
13266567 |
ctatgaaactcttacgcaaaataaaactttagtgacacagagtgaccatcactacaagaaataactatattt |
13266638 |
T |
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