View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_171 (Length: 250)
Name: NF8606A_low_171
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_171 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 11059819 - 11059588
Alignment:
| Q |
5 |
ttacaacttcgatgtactatttgcatccattatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactgg |
104 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11059819 |
ttacaacttcgatgtactatttacatccattatttcaatacttttccaaggataccactggccccatttagatccaccagttctattcattttccactgg |
11059720 |
T |
|
| Q |
105 |
aggctatcgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatcc |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11059719 |
aggctattgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataatgtgtttatcc |
11059620 |
T |
|
| Q |
205 |
aaaatacatatgatggctggaatgaaaataca |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11059619 |
aaaatacatatgatggctggaatgaaaataca |
11059588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 7846969 - 7846748
Alignment:
| Q |
15 |
gatgtactatttgcatccattatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactggaggctatcgc |
114 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7846969 |
gatgtactgtttgcatccattatttcaacacttttccaaggataccacttcccccatttagatccaccagttctattcattttccactggaggctattgc |
7846870 |
T |
|
| Q |
115 |
agccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatccaaaatacata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7846869 |
agccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataaggtgtttatccaaaatacata |
7846770 |
T |
|
| Q |
215 |
tgatggctggaatgaaaataca |
236 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
7846769 |
tgatggctggaatgaaaataca |
7846748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 11073494 - 11073266
Alignment:
| Q |
5 |
ttacaacttcgatgtactatttgcatccattatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactgg |
104 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11073494 |
ttacaatttggatgtactatttgcatccattatttcaatacttttccaaggataccacttcccccatttagatccaccagttctattcattttccactga |
11073395 |
T |
|
| Q |
105 |
aggctatcgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatcc |
204 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
11073394 |
agatcatcgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccctgccatgtaaagctgcagaaaaataaggtgtttatcc |
11073295 |
T |
|
| Q |
205 |
aaaatacatatgatggctggaatgaaaat |
233 |
Q |
| |
|
||||||||||||||||| |||||| |||| |
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|
| T |
11073294 |
aaaatacatatgatggccggaatgtaaat |
11073266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 11041020 - 11041251
Alignment:
| Q |
5 |
ttacaacttcgatgtactatttgcatccattatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactgg |
104 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||||||| ||| |||||||||| ||||| ||| ||||| ||||||||||| ||||||||||||||||| |
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|
| T |
11041020 |
ttacaacttggatgtaccatttgcatgcattatttcaacactactccaaggatagaactgccccgatttaaatccaccagttttattcattttccactgg |
11041119 |
T |
|
| Q |
105 |
aggctatcgcagccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatcc |
204 |
Q |
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|
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
11041120 |
aggctattgcacccatctcgtttttgactgtaaatttcaatataatgacgatatggacttccttgccatgtaaaactgcagaagaataacgtgtttttcc |
11041219 |
T |
|
| Q |
205 |
aaaatacatatgatggctggaatgaaaataca |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
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|
| T |
11041220 |
aaaatacatacgatggctggaatgaaaataca |
11041251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 10973646 - 10973448
Alignment:
| Q |
34 |
ttatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactggaggctatcgcagccatctcgtttttgact |
133 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||| |||||| | ||||||||||| || |||||||||||| | || | || || ||||||||| |||| | |
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|
| T |
10973646 |
ttatttcaacactattccaaggataaaactgcccccataaatatccaccagttttaatcattttccactcgcggttttcacatccatctcgtctttgctt |
10973547 |
T |
|
| Q |
134 |
gtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatccaaaatacatatgatggctggaatgaaaa |
232 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||| |||| ||||||||||| || ||||| ||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
10973546 |
ataaacttcaatataatgacgatcgggatttcctggccacgtaaagctgcaaaagaataatgtgcttttccaaaatacatatgatggcttgaatgaaaa |
10973448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 11000067 - 10999849
Alignment:
| Q |
15 |
gatgtactatttgcatccattatttcaatacttttccaaggatacaactggccccatttagatccaccagttctattcattttccactggaggctatcgc |
114 |
Q |
| |
|
|||||| |||||||| ||||||||| || ||| ||||||||| | |||| |||||| | ||||||||||| |||| |||||||||| | | | | |
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|
| T |
11000067 |
gatgtattatttgcacccattatttgaacactattccaaggaaaaaacttcccccataaatatccaccagttttatttattttccactcgcaattgtgac |
10999968 |
T |
|
| Q |
115 |
agccatctcgtttttgactgtaaatatcaatataatgacgatatggacttccttgccatgtaaagctgcagaaaaataacgtgtttatccaaaatacata |
214 |
Q |
| |
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| |||||||||||| | |||| |||||||||||||||| ||| ||||| |||||||||||||||||| ||||| || || |||||||||||| |
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|
| T |
10999967 |
aaatatctcgtttttgcttataaacttcaatataatgacgattaggatttcctgaccatgtaaagctgcagaagaataatgtactttaccaaaatacata |
10999868 |
T |
|
| Q |
215 |
tgatggctggaatgaaaat |
233 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
10999867 |
tgatggcgtgaatgaaaat |
10999849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 5922265 - 5922314
Alignment:
| Q |
135 |
taaatatcaatataatgacgatatggacttccttgccatgtaaagctgca |
184 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5922265 |
taaatatcaagataatgacgatatggacttcctttccatgtaaagctgca |
5922314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 5931396 - 5931445
Alignment:
| Q |
135 |
taaatatcaatataatgacgatatggacttccttgccatgtaaagctgca |
184 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
5931396 |
taaatatcaagataatgatgatatggacttcctttccatgtaaagctgca |
5931445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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