View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_178 (Length: 250)

Name: NF8606A_low_178
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_178
NF8606A_low_178
[»] chr4 (12 HSPs)
chr4 (19-244)||(8654762-8654987)
chr4 (19-244)||(47541151-47541376)
chr4 (19-244)||(3129671-3129893)
chr4 (19-206)||(7662966-7663153)
chr4 (19-224)||(2631624-2631829)
chr4 (19-225)||(20675248-20675454)
chr4 (19-169)||(23873240-23873390)
chr4 (19-169)||(55298846-55298996)
chr4 (19-215)||(8486699-8486895)
chr4 (19-87)||(49926112-49926180)
chr4 (19-87)||(19647935-19648003)
chr4 (19-87)||(29553586-29553654)
[»] scaffold0029 (1 HSPs)
scaffold0029 (19-244)||(134543-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-244)||(312370-312595)
scaffold0002 (19-244)||(327824-328049)
[»] chr5 (5 HSPs)
chr5 (19-244)||(10486609-10486834)
chr5 (19-242)||(34481173-34481396)
chr5 (19-114)||(587742-587837)
chr5 (19-242)||(35122397-35122620)
chr5 (30-66)||(27795720-27795756)
[»] chr3 (12 HSPs)
chr3 (19-244)||(49731621-49731846)
chr3 (19-235)||(30167042-30167258)
chr3 (19-225)||(2813208-2813414)
chr3 (19-225)||(29309634-29309840)
chr3 (19-225)||(6176186-6176392)
chr3 (19-143)||(9379323-9379447)
chr3 (19-94)||(23601999-23602074)
chr3 (19-86)||(25872955-25873022)
chr3 (37-94)||(8943596-8943653)
chr3 (19-93)||(14867625-14867699)
chr3 (27-65)||(46248738-46248776)
chr3 (28-66)||(48569906-48569944)
[»] chr1 (9 HSPs)
chr1 (19-244)||(21528387-21528616)
chr1 (21-244)||(36306012-36306235)
chr1 (19-242)||(37530792-37531015)
chr1 (19-169)||(32353061-32353211)
chr1 (19-225)||(48073139-48073345)
chr1 (19-103)||(48265548-48265632)
chr1 (19-94)||(30970447-30970522)
chr1 (19-93)||(16873332-16873406)
chr1 (19-87)||(25504839-25504907)
[»] chr7 (12 HSPs)
chr7 (19-244)||(15653394-15653619)
chr7 (66-244)||(46623966-46624144)
chr7 (19-225)||(13440279-13440485)
chr7 (19-225)||(12378436-12378639)
chr7 (19-94)||(45943077-45943152)
chr7 (28-96)||(43105546-43105614)
chr7 (163-242)||(17856106-17856185)
chr7 (18-93)||(41339750-41339825)
chr7 (19-93)||(19728713-19728787)
chr7 (27-65)||(27723973-27724011)
chr7 (19-52)||(46623931-46623964)
chr7 (19-87)||(45992802-45992870)
[»] chr8 (5 HSPs)
chr8 (19-244)||(7452578-7452803)
chr8 (19-224)||(16420719-16420924)
chr8 (19-71)||(19384572-19384624)
chr8 (28-93)||(12134563-12134628)
chr8 (30-66)||(13879354-13879390)
[»] chr2 (14 HSPs)
chr2 (19-235)||(45421745-45421962)
chr2 (19-224)||(13550350-13550555)
chr2 (23-225)||(26894320-26894522)
chr2 (23-225)||(26899759-26899961)
chr2 (19-169)||(43627725-43627875)
chr2 (19-118)||(31085452-31085551)
chr2 (19-118)||(33548098-33548197)
chr2 (98-224)||(13550882-13551008)
chr2 (19-77)||(22052853-22052911)
chr2 (18-77)||(36804137-36804196)
chr2 (18-66)||(36804352-36804400)
chr2 (159-242)||(22725129-22725212)
chr2 (183-224)||(26679225-26679266)
chr2 (30-66)||(40176905-40176941)
[»] scaffold0418 (1 HSPs)
scaffold0418 (19-206)||(7901-8088)
[»] chr6 (9 HSPs)
chr6 (19-236)||(25318080-25318297)
chr6 (19-236)||(26205574-26205791)
chr6 (19-225)||(23347175-23347381)
chr6 (19-169)||(15674051-15674205)
chr6 (19-74)||(33630323-33630378)
chr6 (19-52)||(1683266-1683299)
chr6 (30-93)||(4474935-4474998)
chr6 (19-87)||(19255866-19255934)
chr6 (19-87)||(33640144-33640212)
[»] scaffold0131 (1 HSPs)
scaffold0131 (145-244)||(4238-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (19-93)||(15490-15564)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 8654987 - 8654762
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654987 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 8654888  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654887 cagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 8654788  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||| |||||||||||    
T  8654787 ccaaaacaacgtattagctccatctc 8654762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 47541151 - 47541376
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||||||||| | ||||||||||||||||| ||| |||  ||||||||||||||    
T  47541151 acatcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctccacataactcccggctgctccgaatcaa 47541250  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| ||    
T  47541251 cagaaaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctacaaaaacgaacacaaaaaggaacatcccctaaccacctatcaaa 47541350  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||||| |||||||||    
T  47541351 ccaaaacaacgtatcatctccatctc 47541376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 3129893 - 3129671
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||| | ||||||||||||||||  ||||||   ||||||||||||||    
T  3129893 acatcaagaagtaaagccctacactccgctaacat---ctcctcccactgccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaa 3129797  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
     ||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| | ||    
T  3129796 tagagaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctactaaaacggacacaaaaaggaacatcccctaaccacctaccaaa 3129697  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    ||||||||| ||||||||||||||||    
T  3129696 ccaaaacaatgtatcagctccatctc 3129671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 7663153 - 7662966
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||||| |||||||| ||||||  |||||||||||||||||||| ||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  7663153 acatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaa 7663054  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaa 206  Q
    |||| ||||||||| ||| |||||| | |||||||||| ||||||||||||  ||||| ||||||||||| || ||||||||||||||    
T  7663053 cagagaacaagtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 7662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 2631624 - 2631829
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  2631624 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 2631723  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  ||||||||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  2631724 cagagagcaagtcggccacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 2631823  T
Q  219 ccaaaa 224  Q
    ||||||    
T  2631824 ccaaaa 2631829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 20675248 - 20675454
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||| |||||||||  | | ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  20675248 acatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 20675347  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    || | | ||||||  |||| || ||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | |||||||||||||||||  |    
T  20675348 caaagagcaagtcggccacggatatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctaaccacctatcaga 20675447  T
Q  219 ccaaaac 225  Q
    |||||||    
T  20675448 ccaaaac 20675454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 23873390 - 23873240
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| |||||||||||||||||  |||||||||||||||||||||   |||||||| ||||||||||||    
T  23873390 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccattacctacgtctccacctccacacctccccccaccgctccgaatcaa 23873291  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaaca 169  Q
    |||| | ||||||  | || |||||| ||||||||||||||||||||||||    
T  23873290 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 23873240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 55298846 - 55298996
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| || |||||||||||||||||||   |||||||| ||||||||||||    
T  55298846 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaactacgtctccacctccacacctccccccaccgctccgaatcaa 55298945  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaaca 169  Q
    |||| | ||||||  | || |||||| ||||||||||||||||||||||||    
T  55298946 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 55298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 8486895 - 8486699
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||||||||||||   ||| ||| |||| |||||||||||| ||||||||||||||||||||||   |||||||| | ||||||||||    
T  8486895 acatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacctacgtctccacctccacacctccccccaccggtccgaatcaa 8486796  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatc 215  Q
    |||| | |||||| || || |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||    
T  8486795 cagagagcaagtcgacgacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc 8486699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 49926180 - 49926112
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||| ||||||||||||  |||||| || || ||||||    
T  49926180 acatcaagcagaaaagccctacactccactaacaactcctcctcccacgcccacaatctccgcctccac 49926112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19647935 - 19648003
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||  ||||||||||||  |||||| || || ||||||    
T  19647935 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 29553654 - 29553586
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||  ||||||| |||||||||| ||||||| ||||||||||||  |||||| || || ||||||    
T  29553654 acatcaaacagtaaagtcctacactcctctaacaactcctcctcccacgcccacaatctccgcctccac 29553586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 134768 - 134543
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134768 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 134669  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134668 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 134569  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||| |||||||||||    
T  134568 ccaaaacaacgtattagctccatctc 134543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 312595 - 312370
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312595 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 312496  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312495 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 312396  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||| |||||||||||    
T  312395 ccaaaacaacgtattagctccatctc 312370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 328049 - 327824
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  328049 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 327950  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327949 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 327850  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||| |||||||||||    
T  327849 ccaaaacaacgtattagctccatctc 327824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 10486834 - 10486609
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  10486834 acatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatcaa 10486735  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10486734 cagagaacaagtctgccacagacatgaacttattctatgttaactcaaacagcctacgaaaacggacacaaaaaggaagatcccctaaccacctatccaa 10486635  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    ||||||||||||||||||||||||||    
T  10486634 ccaaaacaacgtatcagctccatctc 10486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 34481173 - 34481396
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  34481173 acatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaa 34481272  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||| | | ||||||||||| |||||||||||||||||||||||| || ||  || |  ||||||| |||||| |||||||||||||||||  |    
T  34481273 cagagagcaaatatgccacagacatagacttattctctgttaactcaaacaaccgactaaacctcacacaaagaggaacctcccctaaccacctatcgga 34481372  T
Q  219 ccaaaacaacgtatcagctccatc 242  Q
    ||||||| | |||||||| |||||    
T  34481373 ccaaaacgaagtatcagccccatc 34481396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 587742 - 587837
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaa 114  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||  ||| | |||||| ||||||||||| | | ||||||| |||||||||    
T  587742 acatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctacgcctccacctccagacatccccccaatgctccgaa 587837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 35122620 - 35122397
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||| ||||||||||||  |||| |||| ||   |||||||||   |||||||||||||||||||||||||  |||||| | |||||||   ||||    
T  35122620 acatcaagcagtaaagccctaagctcctctaataaagtctcctcccaagcccacaacctacgtctccacctccacccaacccctccctgctccaggtcaa 35122521  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
     ||| ||||  |   ||||||| ||    || ||||| | ||| ||||||| |||||| || ||  ||| ||||||||||||  | ||||||||||   |    
T  35122520 gagagaacatattcgccacagaaatggttttgttctcagctaagtcaaacaacctacgaaaccgctcactaaaaggaacatcatcaaaccacctatgaga 35122421  T
Q  219 ccaaaacaacgtatcagctccatc 242  Q
    |||||||||||||||||| |||||    
T  35122420 ccaaaacaacgtatcagcaccatc 35122397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 27795720 - 27795756
Alignment:
Q  30 taaagccctacactccgctaacaagtcctcctcccac 66  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  27795720 taaagccctacactcctctaccaagtcctcctcccac 27795756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 49731846 - 49731621
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||    
T  49731846 acatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatcaa 49731747  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  49731746 cagagaacaagtctgccacatacatgaacttattctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacctatcaaa 49731647  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    ||||||||| || |||||||||||||    
T  49731646 ccaaaacaatgtgtcagctccatctc 49731621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 30167258 - 30167042
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||| ||||| |||  |||||||  |||||    
T  30167258 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaacaccctgctgctccagatcaa 30167159  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| ||||| |||| | |||||||||||||||||||||||  ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  30167158 cagagaacaagtctgccacaaacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaa 30167059  T
Q  219 ccaaaacaacgtatcag 235  Q
    |||||||||||||||||    
T  30167058 ccaaaacaacgtatcag 30167042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 2813414 - 2813208
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  2813414 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 2813315  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  | || |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  2813314 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 2813215  T
Q  219 ccaaaac 225  Q
    |||||||    
T  2813214 ccaaaac 2813208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 29309634 - 29309840
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||| |||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| |||||||||| |    
T  29309634 acatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcga 29309733  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  |||| |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  29309734 cagagagcaagtcggccacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 29309833  T
Q  219 ccaaaac 225  Q
    |||||||    
T  29309834 ccaaaac 29309840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 6176392 - 6176186
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||| | ||||||||||||||||||||||   |||||||| ||||||||||||    
T  6176392 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacctacgtctccacctccacacctccccccaccgctccgaatcaa 6176293  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  | || |||||| ||||||||||| |||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  6176292 cagagagcaagtcggcgacggacatagacttattctctattaactcaaacaaccgtctaaaccgcacacaaagaggagcctcccctatccacctatcaga 6176193  T
Q  219 ccaaaac 225  Q
    |||||||    
T  6176192 ccaaaac 6176186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 9379323 - 9379447
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||| ||||| |||||||||||||||||||   |||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| |||||||    
T  9379323 acatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctccacaaatccccccactgctctgaatcaa 9379422  T
Q  119 cagataacaagtctaccacagacat 143  Q
    || | ||||||| | ||||| ||||    
T  9379423 catagaacaagtttgccacatacat 9379447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 23601999 - 23602074
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 94  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| |||||| |||||||||||||||    
T  23601999 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctatgtctccacctccaca 23602074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25873022 - 25872955
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctcca 86  Q
    ||||||| ||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||||||||    
T  25873022 acatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctcca 25872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 8943596 - 8943653
Alignment:
Q  37 ctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 94  Q
    |||||||||||| |||| || |||||||||  ||||||||||||||||||| ||||||    
T  8943596 ctacactccgcttacaaatcttcctcccacgcccacaacctacgtctccacttccaca 8943653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 14867699 - 14867625
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    |||||||| | ||| |||||||||||| |||| ||  |||||||||||  ||||||||| |||||||| ||||||    
T  14867699 acatcaagtattaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 14867625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 46248776 - 46248738
Alignment:
Q  27 aagtaaagccctacactccgctaacaagtcctcctccca 65  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  46248776 aagtaaagccctacactcccctaacaagtcttcctccca 46248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 48569944 - 48569906
Alignment:
Q  28 agtaaagccctacactccgctaacaagtcctcctcccac 66  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  48569944 agtaaagccctacactcctctaccaagtcctcctcccac 48569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 21528387 - 21528616
Alignment:
Q  19 acatcaagaagtaaagccctaca----ctccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaa 114  Q
    ||||||||||||||||||||||     | ||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||    
T  21528387 acatcaagaagtaaagccctacgtctccaccgctaacatgtcctcctcccactaccataacctacgtctccacctccacataaccccccattgctccgaa 21528486  T
Q  115 tcaacagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctat 214  Q
    |||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21528487 tcaacagagaacaagtctccaacagacatgaacttattctctgttaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctat 21528586  T
Q  215 ccaaccaaaacaacgtatcagctccatctc 244  Q
    ||||||||||||||||||||||| ||||||    
T  21528587 ccaaccaaaacaacgtatcagcttcatctc 21528616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 36306012 - 36306235
Alignment:
Q  21 atcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaaca 120  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||| ||||| ||||||||||| | |||||||  ||||||| ||||||||    
T  36306012 atcaagaagtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaaca 36306111  T
Q  121 gataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaacc 220  Q
    || ||||||||| ||||| |||| | ||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||  |||    
T  36306112 gagaacaagtctgccacatacatgagcttattctccgttaactcaaacagtctacgaaaaaggacacagaaaggaacatcccctaaccacctatcatacc 36306211  T
Q  221 aaaacaacgtatcagctccatctc 244  Q
    |||||||||||||||  |||||||    
T  36306212 aaaacaacgtatcagaaccatctc 36306235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 37530792 - 37531015
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  37530792 acatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaa 37530891  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||| ||||| |||||  ||||||||||||||||||||||| || ||  |  |  ||||||| |||||| |||||||||||||||||  |    
T  37530892 cagagagcaagtctgccacatacatagtcttattctctgttaactcaaacaaccgactaagtctcacacaaagaggaacctcccctaaccacctatcaga 37530991  T
Q  219 ccaaaacaacgtatcagctccatc 242  Q
    ||||||| | |||||||| |||||    
T  37530992 ccaaaacgaagtatcagccccatc 37531015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 32353211 - 32353061
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||| ||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  32353211 acatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 32353112  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaaca 169  Q
    |||| | ||||||  |||| |||||| ||||||||||||||||||||||||    
T  32353111 cagagagcaagtcggccacggacatagacttattctctgttaactcaaaca 32353061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 48073345 - 48073139
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||| ||||||  ||| ||| ||||||||||||| ||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  48073345 acatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 48073246  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  | || |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  48073245 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 48073146  T
Q  219 ccaaaac 225  Q
    |||||||    
T  48073145 ccaaaac 48073139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 48265632 - 48265548
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaacccccc 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48265632 acatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctccacctccacataacccccc 48265548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 30970522 - 30970447
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 94  Q
    |||||||||||||| |||||||||||||| | ||  ||||||||||||  |||||| ||||| |||||||||||||    
T  30970522 acatcaagaagtaaggccctacactccgccaccatctcctcctcccacgcccacaatctacgcctccacctccaca 30970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 16873406 - 16873332
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    |||||||| ||||||||||||  |||| |||| ||   |||||||||   |||||||||||||||||||||||||    
T  16873406 acatcaagcagtaaagccctaagctcctctaataaaatctcctcccaagcccacaacctacgtctccacctccac 16873332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 25504907 - 25504839
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||  ||||||||||||  |||||| || || ||||||    
T  25504907 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 25504839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 15653619 - 15653394
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||| |||||||||  ||||||| ||||||    
T  15653619 acatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccagaaaaccccctgctgctccaaatcaa 15653520  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| ||| |||||| | ||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||    
T  15653519 cagagaacaagtctgccatagacatgagcttattctccgttaactcaaacagtctacgaaaacgggcacaaaaaggaacatcccctaaccacctatcaaa 15653420  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    ||||||||||||||||| ||||||||    
T  15653419 ccaaaacaacgtatcagatccatctc 15653394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 46623966 - 46624144
Alignment:
Q  66 ctgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaacagataacaagtctaccacagacataaacttattctctgttaactca 165  Q
    ||||||||| ||||| ||||||||||| ||||  |||  ||||||| |||||||||| ||||||||| |||||||||| | ||||||||| |||||||||    
T  46623966 ctgccacaaactacgcctccacctccaaaaaaatccctgctgctccaaatcaacagagaacaagtctgccacagacatgagcttattctccgttaactca 46624065  T
Q  166 aacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagctccatctc 244  Q
    ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  46624066 aacagtctgcgaaaacggacacagaaaggaacatcccctaaccacctatcaaaccaaaacaacgtatcagaaccatctc 46624144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 13440279 - 13440485
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||| ||||||  ||| ||| ||||||||||||| ||| || |||||||||||||||||||   |||||||| ||||||||||||    
T  13440279 acatcaagaagtaaagcccaacactcatctagcaactcctcctcccactaccataaactacgtctccacctccacacctccccccaccgctccgaatcaa 13440378  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  | || |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  13440379 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 13440478  T
Q  219 ccaaaac 225  Q
    |||||||    
T  13440479 ccaaaac 13440485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 12378639 - 12378436
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||   |||||||||||||||||||  ||||||||||||||||||||||| || |||| |||| ||||| |||||||| ||| ||| | ||    
T  12378639 acatcaagaagt---gccctacactccgctaacatctcctcctcccactgccacaacctgcgcctccgcctcaacaaatccccccaccgcttcgacttaa 12378543  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    || | ||||| | | |||||||||| | |||||||||  ||||||||||||| ||| |  | ||  |||| | |||||||||||||| |||||||||  |    
T  12378542 caaagaacaaatttgccacagacatgatcttattctccattaactcaaacagtctatgataccgctcacagagaggaacatcccctatccacctatcata 12378443  T
Q  219 ccaaaac 225  Q
    |||||||    
T  12378442 ccaaaac 12378436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 45943077 - 45943152
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccaca 94  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| || |||| ||||||||||||||    
T  45943077 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataatctacatctccacctccaca 45943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 43105546 - 43105614
Alignment:
Q  28 agtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaa 96  Q
    ||||| ||||||||||| |||||||  ||||||||||| ||||||||||| || |||||||||||||||    
T  43105546 agtaacgccctacactctgctaacatctcctcctcccattgccacaacctgcgcctccacctccacaaa 43105614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 17856106 - 17856185
Alignment:
Q  163 tcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagctccatc 242  Q
    ||||||| |||||| || ||  ||| |||||||||||| || ||||||||||   ||||||||||||||||||| |||||    
T  17856106 tcaaacaacctacgaaaccgctcactaaaaggaacatcaccaaaccacctatgagaccaaaacaacgtatcagcaccatc 17856185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 41339750 - 41339825
Alignment:
Q  18 gacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    ||||||||  ||||||| |||||||||| |||| || ||||||||||||  ||||||||| | || ||||||||||    
T  41339750 gacatcaaatagtaaagtcctacactcctctaataattcctcctcccacgcccacaacctgcatcgccacctccac 41339825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 19728713 - 19728787
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    |||||||| |||||  ||||||||||| |||| ||  |||||||||||  ||||||||| |||||||| ||||||    
T  19728713 acatcaagtagtaagaccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 19728787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 27724011 - 27723973
Alignment:
Q  27 aagtaaagccctacactccgctaacaagtcctcctccca 65  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  27724011 aagtaaagccctacactcccctaacaagtcttcctccca 27723973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 46623931 - 46623964
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaaca 52  Q
    |||||||||||||||||||||||||| |||||||    
T  46623931 acatcaagaagtaaagccctacactctgctaaca 46623964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 45992802 - 45992870
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||  ||||||||||||  |||||| || || ||||||    
T  45992802 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 45992870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 7452578 - 7452803
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||| ||||| ||||||||||| | |||||||  ||||||| ||||||    
T  7452578 acatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaa 7452677  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| ||||||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||  |    
T  7452678 cagagaacaagtctgccacagacataagcttattctccgttaactcaaacagtctacgaaaacggacacagaaaggaacatcccctaaccacctatcata 7452777  T
Q  219 ccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||||||||  |||||||    
T  7452778 ccaaaacaacgtatcagaaccatctc 7452803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 16420924 - 16420719
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||| |||||||||||||||| |||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  16420924 acatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 16420825  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  ||||||||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  16420824 cagagagcaagtcggccacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 16420725  T
Q  219 ccaaaa 224  Q
    ||||||    
T  16420724 ccaaaa 16420719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 19384624 - 19384572
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgcca 71  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  19384624 acatcaagaagtaaagccctacactccactaacatctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 12134563 - 12134628
Alignment:
Q  28 agtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    |||||||||||||||||| ||| ||||||||||||||||  ||||||| |||| | ||||||||||    
T  12134563 agtaaagccctacactcctctaccaagtcctcctcccacgcccacaacgtacgccgccacctccac 12134628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 13879390 - 13879354
Alignment:
Q  30 taaagccctacactccgctaacaagtcctcctcccac 66  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13879390 taaagccctacactcctctaccaagtcctcctcccac 13879354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 45421745 - 45421962
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaacccccca-ctgctccgaatca 117  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||| ||||| ||||||||||| ||||  ||||  |||||||  ||||    
T  45421745 acatcaagaagaaaagccctacactccgctaacatctcctcctcccactgcgacaatctacgcctccacctccaaaaaaaacccctgctgctccagatca 45421844  T
Q  118 acagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatcca 217  Q
    ||||| ||||||||| ||||| |||| | |||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||||    
T  45421845 acagagaacaagtctgccacatacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatcca 45421944  T
Q  218 accaaaacaacgtatcag 235  Q
    ||||||||||||||||||    
T  45421945 accaaaacaacgtatcag 45421962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 13550350 - 13550555
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||| ||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||    
T  13550350 acatcaagaattaaagccctgcactcctctagcaagtcctcatcccactgccataacctacgtctccacctccacacatccccccactgctccgaatcaa 13550449  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  ||||  | ||| |||||||||||||||||||||||| || ||  || |  |||| || |||| | ||||||| ||||||||| ||    
T  13550450 cagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccctatccacctatcgaa 13550549  T
Q  219 ccaaaa 224  Q
    ||||||    
T  13550550 ccaaaa 13550555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 26894522 - 26894320
Alignment:
Q  23 caagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaacaga 122  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||    ||||||| |||||||| |||||||    
T  26894522 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26894423  T
Q  123 taacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaa 222  Q
     | ||||||    ||||||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |||||    
T  26894422 gagcaagtcggtgacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcagaccaa 26894323  T
Q  223 aac 225  Q
    |||    
T  26894322 aac 26894320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 26899961 - 26899759
Alignment:
Q  23 caagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaacaga 122  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||    ||||||| |||||||| |||||||    
T  26899961 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26899862  T
Q  123 taacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaa 222  Q
     | ||||||    ||||||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |||||    
T  26899861 gagcaagtcggtgacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcagaccaa 26899762  T
Q  223 aac 225  Q
    |||    
T  26899761 aac 26899759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 43627725 - 43627875
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   ||||||||  |||||||||||    
T  43627725 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccacctctccgaatcaa 43627824  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaaca 169  Q
     ||| | ||||||  ||||  ||||| ||||||||||||||||||||||||    
T  43627825 tagagagcaagtcggccacgaacatagacttattctctgttaactcaaaca 43627875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 31085551 - 31085452
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||| |||||||| | |||||||||||||| | ||||||||||||| |||||||    
T  31085551 acatcaagaagtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatctccacctccacacatccccccactgctctgaatcaa 31085452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 33548098 - 33548197
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  33548098 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 33548197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 13550882 - 13551008
Alignment:
Q  98 ccccccactgctccgaatcaacagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaac 197  Q
    ||||||||||||||||||||||||| | ||||||  ||||  | ||| |||||||||||||||||||||||| || ||  || |  |||| || |||| |    
T  13550882 ccccccactgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaaccgactaaacctcacacgaagaggagc 13550981  T
Q  198 atcccctaaccacctatccaaccaaaa 224  Q
     ||||||| ||||||||| ||||||||    
T  13550982 ctcccctatccacctatcgaaccaaaa 13551008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 22052853 - 22052911
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacct 77  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||    
T  22052853 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacct 22052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 36804137 - 36804196
Alignment:
Q  18 gacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacct 77  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  36804137 gacatcaaatagtaaagccctacactcctctaacaagtcctcctcccacgcccacaacct 36804196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 36804352 - 36804400
Alignment:
Q  18 gacatcaagaagtaaagccctacactccgctaacaagtcctcctcccac 66  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  36804352 gacatcaaatagtaaagccctacactcctctaacaagtcctcctcccac 36804400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 22725212 - 22725129
Alignment:
Q  159 taactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagctccatc 242  Q
    ||||||||||| ||||||||| |  ||||||||||||||   ||| ||||| ||||| |||||||||| ||| ||||| |||||    
T  22725212 taactcaaacaacctacggaatcacacacaaaaaggaaccggccccaaccatctatcaaaccaaaacatcgtgtcagccccatc 22725129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 26679225 - 26679266
Alignment:
Q  183 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 224  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  26679225 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 26679266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 40176905 - 40176941
Alignment:
Q  30 taaagccctacactccgctaacaagtcctcctcccac 66  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40176905 taaagccctacactcctctaccaagtcctcctcccac 40176941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 7901 - 8088
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    |||||||||||||||||| |||||||| ||||||  |||||||||||||||||||| ||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  7901 acatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaa 8000  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaa 206  Q
    |||| ||||||||| ||| |||||| | |||||||||| ||||||||||||  ||||| ||||||||||| || ||||||||||||||    
T  8001 cagagaacaagtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 25318080 - 25318297
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||  |||||||    
T  25318080 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaa 25318179  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||||| ||||||  |||| |||||||||||||||| |||||||||||||| || ||  || |  |||| || |||| | |||| || ||||||||| ||    
T  25318180 cagatagcaagtccgccacggacataaacttattctttgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccttatccacctatcgaa 25318279  T
Q  219 ccaaaacaacgtatcagc 236  Q
    ||||||| | ||||||||    
T  25318280 ccaaaacgatgtatcagc 25318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 26205574 - 26205791
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||  |||||||    
T  26205574 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaa 26205673  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||||| ||||||  |||| |||||||||||||||| |||||||||||||| || ||  || |  |||| || |||| | |||| || ||||||||| ||    
T  26205674 cagatagcaagtccgccacggacataaacttattctttgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccttatccacctatcgaa 26205773  T
Q  219 ccaaaacaacgtatcagc 236  Q
    ||||||| | ||||||||    
T  26205774 ccaaaacgatgtatcagc 26205791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 23347381 - 23347175
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 118  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||   |||||||| ||||||||||||    
T  23347381 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 23347282  T
Q  119 cagataacaagtctaccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 218  Q
    |||| | ||||||  | || |||||| |||||||||||||||||||||||| ||  |  || || ||||||| |||| | ||||||| |||||||||  |    
T  23347281 cagagagcaagtcggcgacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga 23347182  T
Q  219 ccaaaac 225  Q
    |||||||    
T  23347181 ccaaaac 23347175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 15674051 - 15674205
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaacc----ccccactgctccgaa 114  Q
    |||||||||||||||||||| |||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||   ||    |||||  |||| |||    
T  15674051 acatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacctacgtctccacctccacacctccccggccccaacgctctgaa 15674150  T
Q  115 tcaacagataacaagtctaccacagacataaacttattctctgttaactcaaaca 169  Q
    |||||||| |  |||||  ||||||||||| |||||||||| |||||||||||||    
T  15674151 tcaacagagagtaagtcggccacagacatagacttattctccgttaactcaaaca 15674205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33630323 - 33630378
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaa 74  Q
    ||||||| || |||||||||||||||||||||||  ||||||||||||||||||||    
T  33630323 acatcaaaaaataaagccctacactccgctaacatctcctcctcccactgccacaa 33630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1683266 - 1683299
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  1683266 acatcaagaagtaaagccctacactccgctaaca 1683299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 4474935 - 4474998
Alignment:
Q  30 taaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    ||||| |||| ||||| |||| || | ||||||||||  |||||||||||||||||||||||||    
T  4474935 taaagtcctaaactcctctaataaattctcctcccacgcccacaacctacgtctccacctccac 4474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19255866 - 19255934
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||  ||||||||||||  |||||| || || ||||||    
T  19255866 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19255934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 33640144 - 33640212
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccac 87  Q
    |||||||| || ||||||||||||||| ||||||  ||||||||||||  |||||| || || ||||||    
T  33640144 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 33640212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 4337 - 4238
Alignment:
Q  145 aacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagctccatctc 244  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4337 aacttattctctattaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatgagctccatctc 4238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 15564 - 15490
Alignment:
Q  19 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccac 93  Q
    |||||||  |||||||||||||||||| ||||||  ||||||||||||  |||||| || || | ||||||||||    
T  15564 acatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgccacctccac 15490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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