View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_18 (Length: 439)
Name: NF8606A_low_18
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 45819575 - 45819152
Alignment:
| Q |
16 |
tgaaaacgtgttgaattttgaagtagaattgaacttgaattatgattcttctttgtaatgtctgatttctgattctgtgaaatttttaataggaagctct |
115 |
Q |
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| T |
45819575 |
tgaaaacgtgttgaattttgaagtagaattgaacttgaattatgattcttctttgtaatgtctgatttctgattctgtgaaatttttaataggaagctct |
45819476 |
T |
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| Q |
116 |
gtgattgtagattttggagtaaaattgtgattatcgaacgaccttcgtggaagtcaattacgaaagtttcattgcataagcaacaactcgtagataattt |
215 |
Q |
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| T |
45819475 |
gtgattgtagattttggagtaaaattgtgattatcgaacgaccttcgtggaagtcaattacgaaagtttcattgcataagcaacaactcgaagataatct |
45819376 |
T |
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| Q |
216 |
acaacgataattcgatccgtaagctcttgattggcgattaaggacgcagtgcttgaattcacagtaattcgtaaactaaactgaacgaatgtgtctccga |
315 |
Q |
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| T |
45819375 |
acaacgataattcgaaccgtaagctcttgattggcgattaaggacgcagtgcttgaattcacagtaattcgtaaactaaactgaacgaatgtgtctccga |
45819276 |
T |
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| Q |
316 |
tcttcaacctaacaagagaattacggtttctattaaattcggatctgatcgaagcagcgaattctccatccctgttttgccttcaaaattcagagataat |
415 |
Q |
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| T |
45819275 |
tcttcaacctaacaagagaattacggtttctattaaattcggatctgatcgaagcagcgaattctccatccctgttttgccttcaaaattcagagataat |
45819176 |
T |
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| Q |
416 |
tcagtcttcaaaagcggtagcaga |
439 |
Q |
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| T |
45819175 |
tcagtcttcaaaagcggtagcaga |
45819152 |
T |
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