View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_185 (Length: 249)
Name: NF8606A_low_185
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_185 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 14774985 - 14775208
Alignment:
| Q |
18 |
catcaaacaatactagtagttatcatggttcaaaggggagaggtgataaatcaaagataggtaaaggctttcagcatgctgcttcttcagggaccgggaa |
117 |
Q |
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| T |
14774985 |
catcaaacaatactagtagttatcatggttcaaaggggagaggtgataaatcaaagataggtaaaggctttcagcatgctgcttcttcagggaccgggaa |
14775084 |
T |
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| Q |
118 |
gtcagaggtggctcccagtattcctttcaataattatgacagcagacccttgccacagaggacaagaactcattcaaatcgatttgtcactaaatttgat |
217 |
Q |
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| T |
14775085 |
gtcagaggtggctcccagtattcctttcaataattatgacagcagacccttgccacagaggacaagaactcatgcaaatcgatttgtcactaaatttgat |
14775184 |
T |
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| Q |
218 |
agcaacatgcaaactccaaactcg |
241 |
Q |
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| T |
14775185 |
agcaacatgcaaacttcaaactcg |
14775208 |
T |
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