View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_186 (Length: 249)
Name: NF8606A_low_186
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_186 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29847368 - 29847137
Alignment:
| Q |
1 |
agagttgtgaggaaaagtttgtgttctgcagcatagtttcttgatgaccaaagaaagagcttcttctctttgtctttgatggccattgaaatgtgtggaa |
100 |
Q |
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| T |
29847368 |
agagttgtgaggaaaagtttgtgttctgcagcatagtttcttgatgaccaaagaaagagcttcttctctttgtctttgatggccattgaaatgtgtggaa |
29847269 |
T |
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| Q |
101 |
atggaagcaagtgctttggagtgagtgtgatgannnnnnnnnnnnnnnnnnnnnatatattaggaaactttttggttgttaaggtttagggacaaatgag |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847268 |
atggaagcaagtgctttggagtgagtgtgatgagttgtgttgtgttgtgttgtgatatattaggaaactttttggttgttaaggtttagggacaaatgag |
29847169 |
T |
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| Q |
201 |
attcgtttttggagaaattaggataattattg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29847168 |
attcgtttttggagaaattaggataattattg |
29847137 |
T |
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