View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_193 (Length: 247)
Name: NF8606A_low_193
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_193 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 37325181 - 37324957
Alignment:
| Q |
23 |
acgcctatcatttttccataatattttgatatctagaagtttttggtcnnnnnnncaagttaaagacaataatgcgtgttgactcaattatttgaggtgc |
122 |
Q |
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| T |
37325181 |
acgcctatcatttttccataatattttgatatctagaagtttttggtcaaaaaaacaagttaaagacaataatgcgtgttgactcaactatttgaggtgc |
37325082 |
T |
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| Q |
123 |
aagttgcaacaaacactatagacaaatgagtgaagcagccaccccctattataaataggcatgtataaaaactaattgaaatataccaccgatcgaatct |
222 |
Q |
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| T |
37325081 |
aagttgcaacaaacactatagacaaataagtgaagcagccaccccctattataaataggcatgtataaaaactaattgaaatataccaccaatcggatct |
37324982 |
T |
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| Q |
223 |
gagttcatagttattagttcattaa |
247 |
Q |
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| T |
37324981 |
gagttcatagttattagttcattaa |
37324957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 37321110 - 37321065
Alignment:
| Q |
172 |
tataaataggcatgtataaaaactaattgaaatataccaccgatcg |
217 |
Q |
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| T |
37321110 |
tataaataggcatgtatccaaaccaattgaaatataccactgatcg |
37321065 |
T |
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