View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_196 (Length: 247)
Name: NF8606A_low_196
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_196 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 42039403 - 42039635
Alignment:
| Q |
3 |
agatggacatcatgatgttgagataagcactctatatcctggtgaatcattcaggagcttggaggattgctttgagagctttgttgccatggcggccgac |
102 |
Q |
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| T |
42039403 |
agatggaattcatgatgttgagataagcactctatatcctggtgaatcattcaggagcttggaggattgctttgagagctttgttgccatggcggccgac |
42039502 |
T |
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| Q |
103 |
aagattcataaaggagaaaatggagttaccggcggcacgaaggctttagtagaaccagtgccaatcacagcttcctgttgaagagtttcacctcaaaaac |
202 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039503 |
aagattcataaaggagaaaatggagttaccggtggcacgaaggctttagtagaaccagtgccaatcacagcttcctgttgaagagtttcacctcaaaaac |
42039602 |
T |
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| Q |
203 |
cgtcctaggttattctttattgaggtggatatt |
235 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42039603 |
cgtcctaggttattctttattgaggtggatatt |
42039635 |
T |
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