View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_197 (Length: 246)
Name: NF8606A_low_197
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_197 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11059411 - 11059212
Alignment:
| Q |
1 |
aaatgctagtgttaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaatacgtagaaagcttaaatcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11059411 |
aaatgctagtgttaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaatacgtagaaagcttaaatcaaac |
11059312 |
T |
|
| Q |
101 |
ttaatttatagaactctaaataacatagcctatctcttttgaaatgtttaaaatgctaatatttatttttatttatgatgttttgacctacagtaaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11059311 |
ttaatttatagaactctaaataacatagcctatatcttttg-aatttttaaaatgctaatatttatttttatttatgatgttttgacctacaataaattg |
11059213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11073086 - 11072884
Alignment:
| Q |
1 |
aaatgctagtgttaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaatacgtagaaagcttaaatcaaac |
100 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11073086 |
aaatgcaagtattaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaataagtagaaagcttaaatcaaac |
11072987 |
T |
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| Q |
101 |
ttaatttatagaactctaaataacat----agcctatctcttttgaaatgtttaaaatgctaatatttatttttatttatgatgttttgacctacagtaa |
196 |
Q |
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||||||||||| ||||||| || ||| ||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
11072986 |
ttaatttatag-actctaagtagcatataaagcctatctcttttg-aatttttaaaatgcaaatatttacttttatttatgatgttttgacctacaataa |
11072889 |
T |
|
| Q |
197 |
attga |
201 |
Q |
| |
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||||| |
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| T |
11072888 |
attga |
11072884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 7846577 - 7846373
Alignment:
| Q |
1 |
aaatgctagtgttaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaatacgtagaaagcttaaatcaaac |
100 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7846577 |
aaatgcaagtattaaaactacaagaataaaaagtttataggtaattggatatgaatatgccataactagatgttaaatgcgtagaaagcttaaatcaaac |
7846478 |
T |
|
| Q |
101 |
ttaatttataga-actctaaataacatagcctatctcttttgaaatgtttaaaatgctaatatttatttttatttatgatgttttgacctacagtaaatt |
199 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7846477 |
ttaatttatagactctctaaatagcatagcctatctcttttg-aatttttaaaatgcaaatatttatttttatttatgatgttttgacctacaataaatt |
7846379 |
T |
|
| Q |
200 |
gacctt |
205 |
Q |
| |
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||||| |
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|
| T |
7846378 |
aacctt |
7846373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11041422 - 11041642
Alignment:
| Q |
1 |
aaatgctagtgttaaaactagaagaataaaaaacttaaaggtaattggatatgaatctgccataactagatgttaaatacgtagaaagcttaaatcaaac |
100 |
Q |
| |
|
|||||| ||| ||||||| |||| | |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
11041422 |
aaatgcaagtattaaaacaagaattacaaaaaaattaaaggtaattggatatgaatatgccataaccagatgttaaatacgtagaaggcttaaatcaaac |
11041521 |
T |
|
| Q |
101 |
ttaatttatagaactctaaataacatagcctatctcttttgaaatgtttaaaatgctaatatttatttttatttatgatgttttgacctaca--gtaaat |
198 |
Q |
| |
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||||||||||||||| |||||| | |||||||| | ||||| ||| || ||| ||| |||||| |||||| ||||||||||||| |||| |||| |
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| T |
11041522 |
ttaatttatagaactataaatagcttagcctatatgttttg-aattttgaaactgcaaatatt--ttttta---atgatgttttgacatacaatataaac |
11041615 |
T |
|
| Q |
199 |
tgacctttaaattctgaatatattcgt |
225 |
Q |
| |
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||||||||||||| |||| |||||||| |
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|
| T |
11041616 |
tgacctttaaattgtgaagatattcgt |
11041642 |
T |
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