View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_201 (Length: 246)
Name: NF8606A_low_201
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_201 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 53984798 - 53985024
Alignment:
| Q |
6 |
actgagaagaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag |
105 |
Q |
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| T |
53984798 |
actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag |
53984897 |
T |
|
| Q |
106 |
acgtgtgtagaggtagatctaccaaattaaattagatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
205 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984898 |
acgtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
53984997 |
T |
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| Q |
206 |
tgtcgaagcacgtctagcatcaacttc |
232 |
Q |
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||| ||||||||||||||||| ||||| |
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| T |
53984998 |
tgttgaagcacgtctagcatccacttc |
53985024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 53971094 - 53971312
Alignment:
| Q |
7 |
ctgagaagaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaaga |
106 |
Q |
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| T |
53971094 |
ctgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaaga |
53971193 |
T |
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| Q |
107 |
cgtgtgtagaggtagatctaccaaattaaattagatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggacta |
205 |
Q |
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| T |
53971194 |
catgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggacta |
53971291 |
T |
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| Q |
206 |
tgtcgaagcacgtctagcatc |
226 |
Q |
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||| ||||||||||||||| |
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| T |
53971292 |
tgttagagcacgtctagcatc |
53971312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 19935421 - 19935381
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgt |
208 |
Q |
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| T |
19935421 |
aaacctgatgaatggtaagattttgaagtttgggacaatgt |
19935381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 19966560 - 19966520
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgt |
208 |
Q |
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| T |
19966560 |
aaacctgatgaatggtaagattttgaagtttgggacaatgt |
19966520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 34036358 - 34036300
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtcgaagcacgtctagcatc |
226 |
Q |
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|||||| ||||||| ||||||||||||| |||||||| ||| |||||| ||||||||| |
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| T |
34036358 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatc |
34036300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 16163998 - 16164055
Alignment:
| Q |
169 |
aacctgatgaatggtaagatgttgaagtttgggactatgtcgaagcacgtctagcatc |
226 |
Q |
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|||||||||||||| |||||||| ||| ||||| || ||| ||||||| ||||||||| |
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| T |
16163998 |
aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatc |
16164055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtcgaagcacgtctagcatcaacttc |
232 |
Q |
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|||||| ||||||| ||||||||||||| |||||||| ||| |||||| |||| |||| ||||| |
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| T |
6688157 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc |
6688093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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