View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_202 (Length: 246)
Name: NF8606A_low_202
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_202 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 45141485 - 45141702
Alignment:
| Q |
23 |
caatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
122 |
Q |
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| T |
45141485 |
caatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
45141584 |
T |
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| Q |
123 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctga |
222 |
Q |
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| T |
45141585 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctga |
45141684 |
T |
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| Q |
223 |
atgaatttgacaacacca |
240 |
Q |
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|||||||||||||||||| |
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| T |
45141685 |
atgaatttgacaacacca |
45141702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 45152128 - 45152294
Alignment:
| Q |
23 |
caatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
122 |
Q |
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|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
45152128 |
caatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagtgatgaaaaacaagttgaggaaacc |
45152227 |
T |
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| Q |
123 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtg |
189 |
Q |
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| T |
45152228 |
gtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtg |
45152294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 38255952 - 38256107
Alignment:
| Q |
23 |
caatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaaaca |
122 |
Q |
| |
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|||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| |||| |
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| T |
38255952 |
caatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagttgaggaaatt |
38256051 |
T |
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| Q |
123 |
gtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctgg |
178 |
Q |
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|| |||||| | ||||| | |||||| ||| ||||||| ||||| ||||| ||||| |
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| T |
38256052 |
gttgctttcacgttggagagatatggtaccttagacatcatgttcagcaatgctgg |
38256107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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