View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_203 (Length: 246)
Name: NF8606A_low_203
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_203 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 12422947 - 12423138
Alignment:
| Q |
38 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12422947 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcatg |
12423046 |
T |
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| Q |
138 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggca |
229 |
Q |
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| T |
12423047 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggca |
12423138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 8719362 - 8719553
Alignment:
| Q |
38 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8719362 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcatg |
8719461 |
T |
|
| Q |
138 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggca |
229 |
Q |
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| T |
8719462 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggca |
8719553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 38460346 - 38460537
Alignment:
| Q |
38 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38460346 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcatg |
38460445 |
T |
|
| Q |
138 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |
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| T |
38460446 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggca |
38460537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 38459810 - 38459619
Alignment:
| Q |
38 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatg |
137 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38459810 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcgtgttgaatctggtgatggtgagcgaggaaacaagtattggaatcatg |
38459711 |
T |
|
| Q |
138 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |
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| T |
38459710 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggca |
38459619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 30626872 - 30626681
Alignment:
| Q |
38 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
30626872 |
ctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcttg |
30626773 |
T |
|
| Q |
138 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
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| T |
30626772 |
gatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaaatttcaaggaggatgatcttgttgatgtttctggca |
30626681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 34149799 - 34149913
Alignment:
| Q |
42 |
tctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatggatg |
141 |
Q |
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|||||||||||||||||||||||||||| ||| | | |||||||||||||| ||| ||||||| | ||||||||||||||||||||||| | |
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| T |
34149799 |
tctcaatttgtgtaattgcaaaatgaaagaaaaaga-aaaagagaatcatggtga---------tggtgagtgtggaaacaagtattggaatcatgggta |
34149888 |
T |
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| Q |
142 |
tcgaattggggatgatgacatttta |
166 |
Q |
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|||||||||||||| ||||||| |
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| T |
34149889 |
ctgaattggggatgatttcatttta |
34149913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 34177325 - 34177211
Alignment:
| Q |
42 |
tctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcatggatg |
141 |
Q |
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|||||||||||||||||||||||||||| ||| | | |||||||||||||| ||| ||||||| | ||||||||||||||||||||||| | |
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| T |
34177325 |
tctcaatttgtgtaattgcaaaatgaaagaaaaaga-aaaagagaatcatggtga---------tggtgagtgtggaaacaagtattggaatcatgggta |
34177236 |
T |
|
| Q |
142 |
tcgaattggggatgatgacatttta |
166 |
Q |
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|||||||||||||| ||||||| |
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| T |
34177235 |
ctgaattggggatgatttcatttta |
34177211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 31279146 - 31279094
Alignment:
| Q |
169 |
ggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgt |
221 |
Q |
| |
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||||||||||||||| || ||||| |||||||||| ||| || |||||||||| |
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|
| T |
31279146 |
ggtcttcttaggtcgatgtcgttacttttcaaggaagatgatgttgttgatgt |
31279094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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