View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_213 (Length: 244)
Name: NF8606A_low_213
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_213 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 47524045 - 47523828
Alignment:
| Q |
19 |
caaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524045 |
caaaaccaagcttccaactcctaagcgtgtcaactgttcctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagct |
47523946 |
T |
|
| Q |
119 |
acgaaaactatctctgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaaccatgaa |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
47523945 |
acaaaaactatctctgcaaccttttgaccataaatccttatagttgcaaccgaaatgactttacccattttctctaaaatcacattatagaaactatgaa |
47523846 |
T |
|
| Q |
219 |
aattcaagcgtttatgtt |
236 |
Q |
| |
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| |||||||||||||||| |
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| T |
47523845 |
agttcaagcgtttatgtt |
47523828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 47529417 - 47529201
Alignment:
| Q |
19 |
caaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagcc |
118 |
Q |
| |
|
|||||||| |||| | ||||||||||| ||||| ||||||||||| || | |||||||||||||||||||||||||| ||||| || || |||||| ||| |
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| T |
47529417 |
caaaaccatgctttctactcctaagcgagtcaattgtttctcaagttcatccatcaacaaacgacacattccttgtcctcgatgttctttcttggtggcc |
47529318 |
T |
|
| Q |
119 |
acgaaaactatctctgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaaccatgaa |
218 |
Q |
| |
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| |||||||||||| |||||||| |||||||||||||| ||||| || |||||||| |||| |||||||||| ||||||||||||||||||||| || |
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| T |
47529317 |
aagaaaactatctcagcaaccttgtgaccataaatccttatagtagccaccgaaatcacttcctccattttctccaaaatcacattatagaaaccacaaa |
47529218 |
T |
|
| Q |
219 |
aattcaagcgtttatgt |
235 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
47529217 |
agttcaagcgcttatgt |
47529201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 47551094 - 47550882
Alignment:
| Q |
19 |
caaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagcc |
118 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||| ||||||| | | ||||||||||| ||||||||||||||||||||||| || ||||| ||| |
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| T |
47551094 |
caaaaccaagctcccaactcctaagttaatcaattgttcctcaagccccttcatcaacaaacaacacattccttgtcttcgatatttttttttggtggcc |
47550995 |
T |
|
| Q |
119 |
acgaaaactatctctgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaaccatgaa |
218 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||||||||| | ||||| || || | ||||| ||| |||||||| ||||||| ||||||||||| ||| |
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| T |
47550994 |
atgaaaacaatctcagcaaccttttgaccataaatccttacggttgccacataactcactttaccccctttctctataatcacagtatagaaaccacgaa |
47550895 |
T |
|
| Q |
219 |
aattcaagcgttt |
231 |
Q |
| |
|
| ||||| ||||| |
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|
| T |
47550894 |
agttcaaacgttt |
47550882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 44870381 - 44870599
Alignment:
| Q |
19 |
caaaaccaagcttccaactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagcc |
118 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||| ||||||||| | |||||||||||||||||||||| ||| ||||| ||| |||||||||||| |
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|
| T |
44870381 |
caaaaccaatcttcctactcctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatgttgctccttggtagcc |
44870480 |
T |
|
| Q |
119 |
acgaaaactatctctgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaaccatgaa |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||| ||||||||||| ||||||||| ||||||||||| | | |
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| T |
44870481 |
acaaaaactatctctgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacgga |
44870580 |
T |
|
| Q |
219 |
aattcaagcgtttatgttc |
237 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
44870581 |
agttcaagcgtttatgttc |
44870599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 9819548 - 9819729
Alignment:
| Q |
33 |
caactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagccacgaaaactatctc |
132 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||| | |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |
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| T |
9819548 |
caactcctaagcgagttaactgtttctcaatctcatccatcaacaaatgacacattccttgtcgtcgatattgttccttggtggccacgaaaactacctc |
9819647 |
T |
|
| Q |
133 |
tgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaacca |
214 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || ||||| |||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
9819648 |
tgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacca |
9819729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 9854432 - 9854251
Alignment:
| Q |
33 |
caactcctaagcgtgtcaactgtttctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagccacgaaaactatctc |
132 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||| | |||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||| ||| |
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|
| T |
9854432 |
caactcctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctc |
9854333 |
T |
|
| Q |
133 |
tgcaaccttttgaccataaatcctaatagttgcaaccgaaatgacttttcccattttctctaaaatcacattatagaaacca |
214 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || ||||| |||| ||||||||||| ||||| ||||||||||||||| |
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| T |
9854332 |
tgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacca |
9854251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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