View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_222 (Length: 241)

Name: NF8606A_low_222
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_222
NF8606A_low_222
[»] scaffold0016 (1 HSPs)
scaffold0016 (27-218)||(53813-54004)
[»] chr4 (2 HSPs)
chr4 (116-179)||(15707358-15707421)
chr4 (174-218)||(15707440-15707484)
[»] scaffold0642 (2 HSPs)
scaffold0642 (116-179)||(4102-4165)
scaffold0642 (174-218)||(4184-4228)
[»] scaffold0345 (2 HSPs)
scaffold0345 (116-179)||(14014-14077)
scaffold0345 (174-218)||(14096-14140)
[»] scaffold0105 (2 HSPs)
scaffold0105 (116-179)||(24904-24967)
scaffold0105 (174-218)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (116-171)||(1249-1304)
scaffold1526 (174-218)||(1173-1217)
[»] chr8 (2 HSPs)
chr8 (116-179)||(44495504-44495567)
chr8 (177-218)||(44495589-44495630)
[»] chr2 (2 HSPs)
chr2 (116-171)||(3378229-3378284)
chr2 (174-218)||(3378316-3378360)
[»] chr6 (1 HSPs)
chr6 (31-115)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 54004 - 53813
Alignment:
Q  27 agtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 126  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004 agtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 53905  T
Q  127 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53904 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcgttctt 53813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 179  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 179  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 179  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 179  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  177 catccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  116 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  174 acccatccatgaattcactctagagcggtgagtggcttcgttctt 218  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  31 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 115  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University