View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_224 (Length: 241)
Name: NF8606A_low_224
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_224 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 14723558 - 14723779
Alignment:
| Q |
21 |
aacatatggactatgtttgatgcatttcaatctat-gagtgggttataaatcaaggacaagatagtgctggaattattttcaatatgttgcaggtgttga |
119 |
Q |
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| T |
14723558 |
aacatatggactatgtttgatgcatttcaatctattgagtgggttataaatcaaggacaagatagtgctggaattattttcaatatgttgcaggcgctga |
14723657 |
T |
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| Q |
120 |
atgatagtgatgcggccttgtcttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgt |
219 |
Q |
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| T |
14723658 |
atgatagtgatgcggccttgttttgttgtactttgtggagcatttgaaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgt |
14723757 |
T |
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| Q |
220 |
ttttgagcgtgcaaagacctta |
241 |
Q |
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| T |
14723758 |
ttttgagcgtgcaaagacctta |
14723779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 38860532 - 38860585
Alignment:
| Q |
142 |
ttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatga |
195 |
Q |
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| T |
38860532 |
ttgttgcattttgtggagcatttggaagcaaagaaataacaatgtttggaatga |
38860585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 45420964 - 45421181
Alignment:
| Q |
21 |
aacatatggactatgtttgatgcatttcaatctatgagtgggtta-taaatcaaggacaagatagtgctggaattattttcaatatgttgcaggtgttga |
119 |
Q |
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| T |
45420964 |
aacatctggtctatgtttgacgcttttcaatctatgagtggggtaataaatcaaggtcaggacagtgctggaattatttttaacatgctgcaggtgttga |
45421063 |
T |
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| Q |
120 |
atgatagtgatgcggccttgtcttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgt |
219 |
Q |
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| T |
45421064 |
atgctggtgatgcagccttgttttgttgtactttgtggagcatttggaaacaaaggaataataaggtttggaatgaagtgactgacgcataaagtttcgt |
45421163 |
T |
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| Q |
220 |
ttttgagcgtgcaaagac |
237 |
Q |
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| T |
45421164 |
tttttaccgcgcaaagac |
45421181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 3982481 - 3982264
Alignment:
| Q |
21 |
aacatatggactatgtttgatgcatttcaatctatgagtgggtt-ataaatcaaggacaagatagtgctggaattattttcaatatgttgcaggtgttga |
119 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| || || |||||||||| |||||| || ||| |||||||| ||| |
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| T |
3982481 |
aacatctggactatgtttgatgcttttcaatctatgagtggggtgataaatcaaggccaggacagtgctggaaatatttttaacatgctgcaggtgctga |
3982382 |
T |
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| Q |
120 |
atgatagtgatgcggccttgtcttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgt |
219 |
Q |
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| T |
3982381 |
atgctggtgatgcagccttgttttgttgtactttgtggagcatttggaaacaaaggaataataaggtttggaatgaattgactgacgcacaaagattcgt |
3982282 |
T |
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| Q |
220 |
ttttgagcgtgcaaagac |
237 |
Q |
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| T |
3982281 |
ttttgaccgcgcaaagac |
3982264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 52785 - 52612
Alignment:
| Q |
62 |
gttataaatcaaggacaagatagtgctggaattattttcaatatgttgcaggtgttgaatgatagtgatgcggccttgtcttgttgtactttgtggagca |
161 |
Q |
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| T |
52785 |
gttattaatcaaggtcaagatagtgttggaattatttttaatatcttacaggttctagatggtggtgatgcggcgctattttgttgtcttttgtggagta |
52686 |
T |
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| Q |
162 |
tttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgtttttgagcgtgcaaag |
235 |
Q |
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| T |
52685 |
tttggaaacaaagaaataacaagattaggaatgaggtgatagatgcacaatgttttgtttttgagtgcgcaaag |
52612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 14665522 - 14665489
Alignment:
| Q |
157 |
gagcatttggaaacaaaggaacaacaaggtttgg |
190 |
Q |
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| T |
14665522 |
gagcatttggaaacaaaggaacaacaagatttgg |
14665489 |
T |
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