View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_231 (Length: 239)
Name: NF8606A_low_231
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_231 |
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| [»] chr4 (5 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 24666621 - 24666836
Alignment:
| Q |
24 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24666621 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
24666720 |
T |
|
| Q |
124 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
223 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| | |
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| T |
24666721 |
cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca |
24666820 |
T |
|
| Q |
224 |
accattgattcaatca |
239 |
Q |
| |
|
|||||||||||||||| |
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| T |
24666821 |
accattgattcaatca |
24666836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 34941782 - 34941566
Alignment:
| Q |
24 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
122 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34941782 |
agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
34941683 |
T |
|
| Q |
123 |
acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta |
222 |
Q |
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||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
34941682 |
acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc |
34941583 |
T |
|
| Q |
223 |
aaccattgattcaatca |
239 |
Q |
| |
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|||| |||||||||||| |
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| T |
34941582 |
aaccgttgattcaatca |
34941566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 18363426 - 18363636
Alignment:
| Q |
24 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
123 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
18363426 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
18363523 |
T |
|
| Q |
124 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
223 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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| T |
18363524 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
18363621 |
T |
|
| Q |
224 |
accattgattcaatc |
238 |
Q |
| |
|
||||||||||||||| |
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| T |
18363622 |
accattgattcaatc |
18363636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 36599502 - 36599292
Alignment:
| Q |
24 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
36599502 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
36599405 |
T |
|
| Q |
124 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
223 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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| T |
36599404 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
36599307 |
T |
|
| Q |
224 |
accattgattcaatc |
238 |
Q |
| |
|
||||||||||||||| |
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|
| T |
36599306 |
accattgattcaatc |
36599292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
| Q |
71 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
146 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| ||||||| | | | |||| || |||||||||||||||||||| |
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|
| T |
8752465 |
tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag |
8752390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
| Q |
24 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
122 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26240615 |
agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
26240714 |
T |
|
| Q |
123 |
acagatttcagaggagttgaa |
143 |
Q |
| |
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||| |||||| ||||||||| |
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| T |
26240715 |
acatatttcaagggagttgaa |
26240735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 26240779 - 26240855
Alignment:
| Q |
163 |
agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatca |
239 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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|
| T |
26240779 |
agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatca |
26240855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 53242900 - 53242730
Alignment:
| Q |
71 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca |
169 |
Q |
| |
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|||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||| ||| |
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|
| T |
53242900 |
tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca |
53242801 |
T |
|
| Q |
170 |
agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatca |
239 |
Q |
| |
|
| ||| | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
53242800 |
aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatca |
53242730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
| Q |
48 |
tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
146 |
Q |
| |
|
|||| ||||||| || | |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| | |
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| T |
43479315 |
tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa |
43479403 |
T |
|
| Q |
147 |
gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct |
199 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
43479404 |
gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct |
43479456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 19697568 - 19697421
Alignment:
| Q |
84 |
aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa |
183 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
19697568 |
aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa |
19697476 |
T |
|
| Q |
184 |
aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatca |
239 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||| || |||||||||||||| |
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|
| T |
19697475 |
aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatca |
19697421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 13265651 - 13265606
Alignment:
| Q |
193 |
atgttctcaattttatttttaataaatctaaaccattgattcaatc |
238 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
13265651 |
atgttctcatttttatttttaataattctaaaccattgatttaatc |
13265606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
| Q |
134 |
aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt |
233 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||| |||| ||||||| || ||||||||||||| |||| ||||||||| |||||||| | |
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|
| T |
32566462 |
aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat |
32566558 |
T |
|
| Q |
234 |
caatc |
238 |
Q |
| |
|
||||| |
|
|
| T |
32566559 |
caatc |
32566563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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