View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_233 (Length: 239)
Name: NF8606A_low_233
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_233 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 5336877 - 5337099
Alignment:
| Q |
17 |
aaaataactaatataaaactttaaataactaataccaattacatagagacaaaaaacatatctaaccatactgtctagtaagaaatatgttttaacacat |
116 |
Q |
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| T |
5336877 |
aaaataactaatataaaactttaaataactaatgccaattacatagagacaaaaaacatatctaaccatactgtctagtaagaaatatgttttaacacat |
5336976 |
T |
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| Q |
117 |
aacccttgctttaagttcaacccgtgaggtatgcaagacatgatatactactaccaactatcaaacagatacggaaataactagatggactttctcacac |
216 |
Q |
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| T |
5336977 |
aaccctcgctttaagttcaacccgtgaggtatgcaagacatgatatactactaccaactatcaaacagatacggaaataactagatggactttctcacac |
5337076 |
T |
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| Q |
217 |
ataattcatgcttagataattaa |
239 |
Q |
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|||||||||||||| |||||||| |
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| T |
5337077 |
ataattcatgcttaaataattaa |
5337099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 5376702 - 5376743
Alignment:
| Q |
19 |
aataactaatataaaactttaaataactaataccaattacat |
60 |
Q |
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||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
5376702 |
aataattaatataaaactttaaataaccaataacaattacat |
5376743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 5428447 - 5428488
Alignment:
| Q |
19 |
aataactaatataaaactttaaataactaataccaattacat |
60 |
Q |
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||||| |||||||||||| ||||||||||||| ||||||||| |
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| T |
5428447 |
aataaataatataaaactctaaataactaatagcaattacat |
5428488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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