View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_235 (Length: 239)
Name: NF8606A_low_235
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_235 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 30455876 - 30456074
Alignment:
| Q |
20 |
atcaatcttgctaagagaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcatt |
119 |
Q |
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| T |
30455876 |
atcaatcttgctaagaaaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgaatcgatgactcatctctttcttcatt |
30455975 |
T |
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| Q |
120 |
gtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttatttgtccatgctttatgttggacta |
218 |
Q |
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| T |
30455976 |
gtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcatgccgtcgaatttatttgtccatgctttatgttggacta |
30456074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 5745743 - 5745916
Alignment:
| Q |
23 |
aatcttgctaagagaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcattgtg |
122 |
Q |
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| T |
5745743 |
aatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttttcttcattgta |
5745842 |
T |
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| Q |
123 |
agtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttattt |
196 |
Q |
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| T |
5745843 |
gttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttattt |
5745916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 5782702 - 5782875
Alignment:
| Q |
23 |
aatcttgctaagagaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcattgtg |
122 |
Q |
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| T |
5782702 |
aatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttttcttcattgta |
5782801 |
T |
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| Q |
123 |
agtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttattt |
196 |
Q |
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| T |
5782802 |
gttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttattt |
5782875 |
T |
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