View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_239 (Length: 238)
Name: NF8606A_low_239
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_239 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 29222829 - 29222622
Alignment:
| Q |
21 |
ggtagtttgttctagctatctctatctctttagaagagaaattatatttgta-caaccatttctttgtatttggttgtcctttaaattattttaaaaacc |
119 |
Q |
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| T |
29222829 |
ggtagtttgttttagctatctttgtctttttagaagagaaatgatatatgtatcatttatttgtatgtatttagttgtcctttaaattattttaaaaatg |
29222730 |
T |
|
| Q |
120 |
attgatcaaattacatatctcct-------tggcttggtgttttaatggagttttggagttgagagcttacttggctagtcgtttttagctcatagtttt |
212 |
Q |
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| T |
29222729 |
attgatcaaataacatatctccttctaaaatggcttggtg-tttattaaagttttggagttgggagcttacttggctagccatttttagctcgttgtttt |
29222631 |
T |
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| Q |
213 |
ttgtttgag |
221 |
Q |
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||||||||| |
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| T |
29222630 |
ttgtttgag |
29222622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 29226774 - 29226702
Alignment:
| Q |
21 |
ggtagtttgttctagctatctctatctctttagaagagaaattatatttgtacaaccatttctttgtatttgg |
93 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29226774 |
ggtagtttgttctagctatctctgtctttttagaagagaaatcatatttgtacaaccatttctttgtatttgg |
29226702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 305047 - 305018
Alignment:
| Q |
52 |
agaagagaaattatatttgtacaaccattt |
81 |
Q |
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| T |
305047 |
agaagagaaattatatttgtacaaccattt |
305018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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