View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_244 (Length: 236)
Name: NF8606A_low_244
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_244 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14723782 - 14724003
Alignment:
| Q |
1 |
ggatgactcgaaggcagccaaggattttcgccaaccactttctagtatgcaaagacctgttcaatacccaagatggcagaaacctatggaaggtagattc |
100 |
Q |
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| T |
14723782 |
ggatgactcgaaggcagccaaggattttcaccaaccactttctagtatgcaaagacctgttcaatacccaagatggcagaaacctatggaaggtagattc |
14723881 |
T |
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| Q |
101 |
gaatgtaacattgatgcttccttcaaaaagttaaacagggtgggaatcagaatgtgtatcagagatgatttgggttcctttgtgttggctaaaactgaat |
200 |
Q |
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| T |
14723882 |
aaatgtaacattgatgcttccttcaaacagttaaacagggtgggaatcagaatgtgtatcagggatgatttgggttcctttttgttggctaaaactgaat |
14723981 |
T |
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| Q |
201 |
ggattagtcctctttgtgatgt |
222 |
Q |
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| T |
14723982 |
ggattagtcctctttgtgatgt |
14724003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 45421197 - 45421412
Alignment:
| Q |
10 |
gaaggcagccaaggattttcgccaaccactttctagtatgcaaagacctgttcaatacccaagatggcagaaacctatggaaggtagattcgaatgtaac |
109 |
Q |
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| T |
45421197 |
gaagacagctaaggattttcgccaaccaacttctagtatgcaaagacttgttcaatacccaagatggcagaaacctatggaaggtagattcaaatgcaat |
45421296 |
T |
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| Q |
110 |
attgatgcttcctt---caaaaagttaaacagggtgggaatcagaatgtgtatcagagatgatttgggttcctttgtgttggctaaaactgaatggatta |
206 |
Q |
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| T |
45421297 |
attgatgcttccttctccaagcatttaaacaggatgggaatcaaaatttgtattagggatgactcaggttcctttgtgttggctagaactgaatcgatta |
45421396 |
T |
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| Q |
207 |
gtcctctttgtgatgt |
222 |
Q |
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| T |
45421397 |
gtcctctttgtgatgt |
45421412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 3982256 - 3982033
Alignment:
| Q |
2 |
gatgactcgaaggcagccaaggattttcgccaaccactttctagtatgcaaagacctgttcaatacccaagatggcagaaacctatggaaggtagattcg |
101 |
Q |
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||||||| |||| |||| ||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
3982256 |
gatgactggaagacagctaaggatttttgccaaccaacttctaatatgcaaagacctgttcaatatccaagatggcagaaacccttggaaggtagattca |
3982157 |
T |
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| Q |
102 |
aatgtaacattgatgcttcctt---caaaaagttaaacagggtgggaatcagaatgtgtatcagagatgatttgggttcctttgtgttggctaaaactga |
198 |
Q |
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| T |
3982156 |
aatgcaatattgatgcatccttctccaagcatttaaacagggtgggaatcagaatttgtattagggatgactcaggttcctttgtgttggctagaaccga |
3982057 |
T |
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| Q |
199 |
atggattagtcctctttgtgatgt |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
3982056 |
atggattagtcctctttgtgatgt |
3982033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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