View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_245 (Length: 236)
Name: NF8606A_low_245
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_245 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 30841800 - 30841585
Alignment:
| Q |
21 |
aataacccctagtacgaggaaataaagaaatggaccaaccacannnnnnnataattaatgttgtttagcaaatatgaggtagaagttttacattgtttta |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30841800 |
aataaccgctagtacgaggaaataaagaaatggaccaaccacatttttttataattaatgttgtttagcaaatatgaggtagaagttttacattgtttaa |
30841701 |
T |
|
| Q |
121 |
aaagtgaaggttacgattttgagtaaagatggggtgtacaattcacttgtatgatcgctcttagtctaatgaggatgatccatcgggctcctctcgtaac |
220 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
30841700 |
aaagtggaggttacgattttgagtaaagatggggtgtacaattcacttgtatgatcgctctgagtccaatgtggatgatccatcgggctcctctcgtaac |
30841601 |
T |
|
| Q |
221 |
ccaacactggtctctg |
236 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
30841600 |
gcaacagtggtctctg |
30841585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University