View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_250 (Length: 234)

Name: NF8606A_low_250
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_250
NF8606A_low_250
[»] chr4 (6 HSPs)
chr4 (18-208)||(45858795-45858985)
chr4 (28-203)||(45876731-45876906)
chr4 (59-190)||(56208539-56208670)
chr4 (53-197)||(47293456-47293600)
chr4 (53-158)||(55705881-55705986)
chr4 (78-186)||(54304249-54304357)
[»] chr5 (3 HSPs)
chr5 (53-198)||(35854542-35854687)
chr5 (53-129)||(35802504-35802580)
chr5 (55-186)||(10521303-10521434)
[»] chr8 (2 HSPs)
chr8 (52-174)||(7972100-7972222)
chr8 (53-179)||(7961725-7961851)
[»] chr2 (1 HSPs)
chr2 (48-189)||(24357450-24357591)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 45858985 - 45858795
Alignment:
Q  18 caatagttacttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggt 117  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  45858985 caatagttacttaccgctactgtcctgtcactaggtagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggt 45858886  T
Q  118 ttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacatcaagacagtcaggttgatttaagaa 208  Q
     |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||| ||||    
T  45858885 ctggttgatgctattggtgggctatcacgtgctattgctatagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaa 45858795  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 45876906 - 45876731
Alignment:
Q  28 ttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatg 127  Q
    ||||||||||| ||  ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  45876906 ttacagctactatcccgtcgctaggtagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatg 45876807  T
Q  128 ctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacatcaagacagtcaggttgattt 203  Q
    ||||||||||| |||||||||||||||||||||| ||| |||| ||  |||||| ||||||||| |||||||||||    
T  45876806 ctattggtgggctatctcgtgctattgctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt 45876731  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  59 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 158  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  159 agccaaactgaaggccgatatacatcaagaca 190  Q
    ||| ||| ||||||| | ||||| ||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  53 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 152  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  153 tgctatagccaaactgaaggccgatatacatcaagacagtcaggt 197  Q
    ||||||||| ||| |||||||| |||||| |||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

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Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 55705881 - 55705986
Alignment:
Q  53 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 152  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  153 tgctat 158  Q
    ||||||    
T  55705981 tgctat 55705986  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  78 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 177  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  178 atacatcaa 186  Q
    |||| ||||    
T  54304349 atacctcaa 54304357  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  53 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 152  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  153 tgctatagccaaactgaaggccgatatacatcaagacagtcaggtt 198  Q
    ||||||||| ||| |||||||| |||||| |||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  53 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 129  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  55 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 154  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  155 ctatagccaaactgaaggccgatatacatcaa 186  Q
    |||| || ||| | |||||| |||||| ||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 7972222 - 7972100
Alignment:
Q  52 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 151  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  152 ttgctatagccaaactgaaggcc 174  Q
    |||||||||| ||| ||||||||    
T  7972122 ttgctatagcaaaattgaaggcc 7972100  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 7961851 - 7961725
Alignment:
Q  53 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 152  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  153 tgctatagccaaactgaaggccgatat 179  Q
    ||||||||| ||| |||||||| ||||    
T  7961751 tgctatagcaaaattgaaggccaatat 7961725  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  48 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 147  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  148 gctattgctatagccaaactgaaggccgatatacatcaagac 189  Q
    |||||||| ||||| ||| |||||||| |||||| |||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

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