View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_251 (Length: 234)
Name: NF8606A_low_251
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_251 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7820933 - 7821109
Alignment:
| Q |
1 |
gttgatgaagtataaaataaaaaattatcctgattaaaaccaaagttttctatatttagaaggattaaatgaataatgaagccttatttttattactcta |
100 |
Q |
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| T |
7820933 |
gttgatgaagtataaaataaaaaattatcctgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatttttattactcta |
7821032 |
T |
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| Q |
101 |
atttataataagcgacctatataacatttatccnnnnnnnnnatatgtaaaatagacagaaatttttcatgattgtc |
177 |
Q |
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| T |
7821033 |
atttataataagcgacctatataacatttatcctttttttttttatgtaaaattgacagaaatttttcatgattgtc |
7821109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7810967 - 7811097
Alignment:
| Q |
1 |
gttgatgaagtataaaataaaaaattatcctgattaaaaccaaagttttctatatttagaaggattaaatgaataatgaagccttatttttattactcta |
100 |
Q |
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| T |
7810967 |
gttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttattactcta |
7811064 |
T |
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| Q |
101 |
atttataataagcgacctatataacatttatcc |
133 |
Q |
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| T |
7811065 |
atttataatatgcgacctatatgacatttatcc |
7811097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 7811161 - 7811194
Alignment:
| Q |
181 |
gaaggtaaggaagttaagttggaaatgaaggtag |
214 |
Q |
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| T |
7811161 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 7811357 - 7811390
Alignment:
| Q |
181 |
gaaggtaaggaagttaagttggaaatgaaggtag |
214 |
Q |
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| T |
7811357 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 7821129 - 7821162
Alignment:
| Q |
181 |
gaaggtaaggaagttaagttggaaatgaaggtag |
214 |
Q |
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| T |
7821129 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7821162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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