View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_252 (Length: 233)
Name: NF8606A_low_252
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_252 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 47218714 - 47218908
Alignment:
| Q |
7 |
acaatgagatggacatcttgcagagtctatagtcatggctttggtagaaagaggtatggttttgtctataatgatggtagctatgcagatttcatatgca |
106 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47218714 |
acaaggagaaggatatcttgcagagtctatagtcatggctttggtagaaagaggtatggttttgtctataatgatggtagctatgcagatttcatatgca |
47218813 |
T |
|
| Q |
107 |
gctgtatataaggttggtgattctgctggctggactacacttggtaacattgactacaaaaaatgggctgctaccaagaacttccaacttggtga |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47218814 |
gctgtatacaaggttggtgattctgctggctggactacacttggtaacattgactacaaaaaatgggctgctaccaagaacttccaacttggtga |
47218908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 739170 - 739054
Alignment:
| Q |
77 |
atgatggtagctatgcagatttcatatgcagctgtatataaggttggtgattctgctggctggactacacttggtaacattgactacaaaaaatgggctg |
176 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||| | |||||||| || ||| |||||||||| | |||||| || || ||||| |||||||||| |
|
|
| T |
739170 |
atgatggtagctatcaaggtttcaaatgcagctgttcacaaggttggagactcttctggctggacaatcattggtagtatagattacaagaaatgggctg |
739071 |
T |
|
| Q |
177 |
ctaccaagaacttccaa |
193 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
739070 |
ctactaagaacttccaa |
739054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University