View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_255 (Length: 232)
Name: NF8606A_low_255
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_255 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30841490 - 30841261
Alignment:
| Q |
1 |
actgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagattgttgtgtaa |
100 |
Q |
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| T |
30841490 |
actgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaa |
30841391 |
T |
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| Q |
101 |
caagcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaa |
199 |
Q |
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| T |
30841390 |
caaccgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaa |
30841291 |
T |
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| Q |
200 |
cctannnnnnnaaggttttgggtaaagatg |
229 |
Q |
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|||| ||||||||||||||||||| |
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| T |
30841290 |
cctatttttttaaggttttgggtaaagatg |
30841261 |
T |
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