View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_256 (Length: 231)

Name: NF8606A_low_256
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_256
NF8606A_low_256
[»] chr7 (1 HSPs)
chr7 (1-231)||(29544885-29545115)
[»] chr3 (4 HSPs)
chr3 (28-88)||(1602361-1602421)
chr3 (163-222)||(19218880-19218939)
chr3 (28-88)||(1618476-1618536)
chr3 (39-75)||(9612046-9612082)
[»] scaffold0171 (1 HSPs)
scaffold0171 (149-200)||(21781-21832)
[»] chr8 (2 HSPs)
chr8 (152-227)||(28858966-28859041)
chr8 (39-75)||(8868072-8868108)
[»] chr5 (1 HSPs)
chr5 (152-185)||(7742578-7742611)
[»] chr2 (1 HSPs)
chr2 (34-75)||(35220589-35220630)
[»] chr4 (1 HSPs)
chr4 (45-77)||(29474009-29474041)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29545115 - 29544885
Alignment:
Q  1 agataatatattctatgagttagctttttgactaacacaacgacattcattcattcaaattggtagactacatcaattgagaacaaatagnnnnnnngag 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||    
T  29545115 agataatatattctatgagttagttttttgactaacacaacgacattcattcattcaaattggtaaactacatcaattgagaacaaatagaaaaaaagag 29545016  T
Q  101 aaactccatctggaactgtaacgaatatcctatctcctgatatgttcgggctttttctaccgatccaacttgaaaaacaagcaaagagtgactttaaccc 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  29545015 aaactccatctggaactgtaatgaatatcctatctcctgatatgttcgggttttttccaccgatccaacttgaaaagcaagcaaagagtgactttaaccc 29544916  T
Q  201 gcagaaaaacgcagttgcgcatccctgacgt 231  Q
    |||||||||||||||||||||||||||||||    
T  29544915 gcagaaaaacgcagttgcgcatccctgacgt 29544885  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 1602421 - 1602361
Alignment:
Q  28 ttgactaacacaacgacattcattcattcaaattggtagactacatcaattgagaacaaat 88  Q
    |||||||| |||||||||||||||||||||||||| |||||  ||||||| ||||||||||    
T  1602421 ttgactaaaacaacgacattcattcattcaaattgatagacagcatcaatcgagaacaaat 1602361  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 19218880 - 19218939
Alignment:
Q  163 atccaacttgaaaaacaagcaaagagtgactttaacccgcagaaaaacgcagttgcgcat 222  Q
    ||||| |||| |||| ||||||||||||| |||||||||||||||| ||||| |||||||    
T  19218880 atccatcttggaaaataagcaaagagtgattttaacccgcagaaaagcgcagctgcgcat 19218939  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 1618476 - 1618536
Alignment:
Q  28 ttgactaacacaacgacattcattcattcaaattggtagactacatcaattgagaacaaat 88  Q
    |||||||| ||||||||||||| |||||||||||| |||||| | || ||||| |||||||    
T  1618476 ttgactaaaacaacgacattcactcattcaaattgatagactgcgtcgattgaaaacaaat 1618536  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 9612046 - 9612082
Alignment:
Q  39 aacgacattcattcattcaaattggtagactacatca 75  Q
    |||||||||||| |||||||||||||||| |||||||    
T  9612046 aacgacattcatccattcaaattggtagaatacatca 9612082  T

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Target: scaffold0171 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 21832 - 21781
Alignment:
Q  149 ggctttttctaccgatccaacttgaaaaacaagcaaagagtgactttaaccc 200  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  21832 ggctttttccaccgatccagcttgaaaaacaagcaaagagtgattttaaccc 21781  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 28858966 - 28859041
Alignment:
Q  152 tttttctaccgatccaacttgaaaaacaagcaaagagtgactttaacccgcagaaaaacgcagttgcgcatccctg 227  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||| || |||||  ||||  ||||||||||||    
T  28858966 tttttctaccgatccaacttggaaaacaagaaaagagtgattttaacacgtagaaattcgcaactgcgcatccctg 28859041  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 8868108 - 8868072
Alignment:
Q  39 aacgacattcattcattcaaattggtagactacatca 75  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8868108 aacgacattcattcattcaaattgatagaatacatca 8868072  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 7742578 - 7742611
Alignment:
Q  152 tttttctaccgatccaacttgaaaaacaagcaaa 185  Q
    |||||| |||||||||||||||||||||||||||    
T  7742578 tttttccaccgatccaacttgaaaaacaagcaaa 7742611  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 35220630 - 35220589
Alignment:
Q  34 aacacaacgacattcattcattcaaattggtagactacatca 75  Q
    |||| |||||||||||||||||||||||| |||| |||||||    
T  35220630 aacaaaacgacattcattcattcaaattgatagagtacatca 35220589  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 29474009 - 29474041
Alignment:
Q  45 attcattcattcaaattggtagactacatcaat 77  Q
    ||||||||||||||||||||||| |||||||||    
T  29474009 attcattcattcaaattggtagagtacatcaat 29474041  T

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