View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_272 (Length: 230)
Name: NF8606A_low_272
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_272 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 49165389 - 49165610
Alignment:
| Q |
7 |
gttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctannnnnnnatgactcacgattgacaacacta |
106 |
Q |
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| T |
49165389 |
gttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctatttttttatgactcacgattgacaacacta |
49165488 |
T |
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| Q |
107 |
gaatcaagnnnnnnnntgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaagg |
206 |
Q |
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| T |
49165489 |
gaatcaagaaaaaaa-tgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaagg |
49165587 |
T |
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| Q |
207 |
aaactcaaagaaactcactgcag |
229 |
Q |
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| T |
49165588 |
aaactcaaagaaactcactgcag |
49165610 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 43751932 - 43752004
Alignment:
| Q |
143 |
aaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaa |
215 |
Q |
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| T |
43751932 |
aaatagatgtagcttatttgtaaattgtttttttgcttttgttggcatactataggaaagaaggcaactcaaa |
43752004 |
T |
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