View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_273 (Length: 230)
Name: NF8606A_low_273
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_273 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48825823 - 48826056
Alignment:
| Q |
1 |
gagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatgaatagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcct |
100 |
Q |
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| T |
48825823 |
gagaggagggaagtgtaagcttccatgtaaactttgtcgcatttat----gaatagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcct |
48825918 |
T |
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| Q |
101 |
aaaccaattatatgtataacattt--------------caaatcaaatgaattgcaatggagaagaagagcttactgtcgcagcgcagagagagaggtaa |
186 |
Q |
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| T |
48825919 |
aaaccaattat--gtataacatttttctactgaactatcaaatcaaatgaattgcaatggagaagaagagcttactgtcgcagcgcagagagagaggtaa |
48826016 |
T |
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| Q |
187 |
tgacacagcctgcggggagagtttgctggcgaggttactg |
226 |
Q |
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| T |
48826017 |
tgacacagcctgcggggagagtttgctggcgaggttactg |
48826056 |
T |
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Back To:
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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 53054222 - 53054339
Alignment:
| Q |
1 |
gagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatgaatagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcct |
100 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||| | |||||||||| |||||||||||| || ||||||||||| | |||||| ||| |
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| T |
53054222 |
gagagaagggaagtgtaagcttccatgtaaaccttgtcgcatt----tttgaatagcttctaaacctttgagtgtaatatcttgctcatcgcccaaccct |
53054317 |
T |
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| Q |
101 |
aaaccaattatatgtataacattt |
124 |
Q |
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||||| || |||||||||||||| |
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| T |
53054318 |
aaaccgat--tatgtataacattt |
53054339 |
T |
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