View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_278 (Length: 229)
Name: NF8606A_low_278
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_278 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5052756 - 5052977
Alignment:
| Q |
1 |
atggtaaattcatattaatttatgctaccatccaacttcggttcgttagtttgccttgttcgagnnnnnnnnntatgttaccatctgtttcaaattgtat |
100 |
Q |
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| T |
5052756 |
atggtaaattcatattaatttatgctaccatccaatttcggttcattagtttgccttgttcgagaaaaaaaa-tatgctaccatctgtttcaaattgtat |
5052854 |
T |
|
| Q |
101 |
aagtatctattttttctccctatatattaagaaaattttgtagtgaacttaatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052855 |
aagtatctattttttctccctatatattaagaaaattttgtagtgaacttgatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatatta |
5052954 |
T |
|
| Q |
201 |
atgtttttctggaacatcctttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5052955 |
atgtttttctggaacatcctttg |
5052977 |
T |
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