View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_28 (Length: 417)

Name: NF8606A_low_28
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_28
NF8606A_low_28
[»] chr8 (5 HSPs)
chr8 (13-407)||(7926884-7927278)
chr8 (19-408)||(8302308-8302697)
chr8 (19-200)||(41662822-41663003)
chr8 (20-261)||(13876878-13877118)
chr8 (19-228)||(20826805-20827014)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-407)||(103090-103484)
[»] chr7 (6 HSPs)
chr7 (23-407)||(4935375-4935759)
chr7 (19-408)||(29970479-29970868)
chr7 (2-414)||(17723123-17723535)
chr7 (101-165)||(17058105-17058169)
chr7 (62-262)||(20658463-20658663)
chr7 (64-174)||(8773394-8773504)
[»] chr3 (4 HSPs)
chr3 (21-415)||(19917471-19917865)
chr3 (120-407)||(2366815-2367102)
chr3 (59-170)||(10620147-10620258)
chr3 (116-251)||(21738319-21738454)
[»] chr4 (2 HSPs)
chr4 (23-407)||(47421313-47421697)
chr4 (176-407)||(45716483-45716714)
[»] chr5 (3 HSPs)
chr5 (13-415)||(23240880-23241282)
chr5 (20-332)||(33172164-33172476)
chr5 (19-245)||(25854848-25855074)
[»] chr6 (3 HSPs)
chr6 (19-234)||(17603755-17603969)
chr6 (19-228)||(17555600-17555809)
chr6 (143-213)||(18680081-18680151)
[»] chr2 (2 HSPs)
chr2 (68-204)||(9666456-9666592)
chr2 (64-174)||(28398030-28398140)
[»] chr1 (6 HSPs)
chr1 (68-204)||(39432840-39432976)
chr1 (30-212)||(9137748-9137930)
chr1 (68-176)||(20798186-20798294)
chr1 (107-165)||(21412851-21412909)
chr1 (59-165)||(22189271-22189377)
chr1 (143-251)||(47620478-47620586)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 7926884 - 7927278
Alignment:
Q  13 atcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatca 112  Q
    |||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || || | |||||||||||||    
T  7926884 atcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatacgataggacagtgatca 7926983  T
Q  113 gataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat 212  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  7926984 gataaacctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtccat 7927083  T
Q  213 cccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctg 312  Q
    |||||||| ||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||    
T  7927084 cccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactg 7927183  T
Q  313 agaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg 407  Q
    ||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7927184 agaccctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctcg 7927278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 8302308 - 8302697
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    ||||||||||||||||||||| || ||||  ||||||| ||||||||| ||||||||||||||||||||||| ||||| |  ||||| |||||||||||     
T  8302308 ataaccaggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcttcatccacagacaacacaatgggacaatgatcagataaa 8302407  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
    |||||||| || || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8302408 cctcttaactgagctatctgaatgcaattaggccacaccatacaccattcttcagagagcaagaacctatccaacctactcatcgaacgaccatccccct 8302507  T
Q  219 tataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaacc 318  Q
    |||||||||||||||| ||||||| || |||||  ||||||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  8302508 tataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctaccacctgagaacc 8302607  T
Q  319 cctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcga 408  Q
    ||||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| || || ||||| ||||||||||||||||||||    
T  8302608 cctaaccgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacacactttattattacctaaagaaagcaacctcga 8302697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 41663003 - 41662822
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||| |||||||||||||||| || |||| |||||||| | ||||||| ||||||||||||||||||||||| ||||| | ||| ||||||| |||||||    
T  41663003 ataatcaggcatatcttgccaacatttcagtagacgcaccagtctcggcccccaattctcttcatccacagacaacacaatagggcagtgattagataat 41662904  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactca 200  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41662903 cctcttaactgagccacctgaatgcaattaggccataccaaacaccattcttcagagagcaagaacctatccaacctactca 41662822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 13877118 - 13876878
Alignment:
Q  20 taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc 119  Q
    |||||||||||||||||||| || |||||||  |||| || |||||| ||||| || || ||||| || || ||||| | |||||| ||||| || |  |    
T  13877118 taaccaggcatatcttgccaacatttcaataatcgcaacg-tctcggcccccagttttcctcatctaccgacaacacaataggacaatgatctgaaagac 13877020  T
Q  120 ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt 219  Q
    | ||||| ||  | |||||||| ||||| ||||||| ||| |||||  |||| || | ||| ||||| |||||||||||||| || || |||||||||||    
T  13877019 cccttaagtgaccaacctgaatacaatttggccacaacaagcaccacgcttcggataacaaaaacctgtccaacctactcatagatcgaccatccccctt 13876920  T
Q  220 ataccaagtaaactttctcccacataacggtaggtcaatcaa 261  Q
    | |||| ||||||||||  |||||||| ||||  ||||||||    
T  13876919 aaaccaggtaaactttcggccacataaaggtaaatcaatcaa 13876878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 20826805 - 20827014
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||||||||||| |||||||| || ||||  ||||||| ||| ||| | |||||||| |||||||| || || ||||| |  ||||| |||| ||| |      
T  20826805 ataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcagtccccaattttcttcatctactgacaacacaatcggacaatgattagacaga 20826904  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
    || | ||  || || ||||| || |||||||||||||||| ||||||  |||| || | ||| || ||||||||||| |||||||| || ||||||||||    
T  20826905 ccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaaaaatctatccaacctgctcatcgaccgcccatccccct 20827004  T
Q  219 tataccaagt 228  Q
    || |||||||    
T  20827005 taaaccaagt 20827014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 103484 - 103090
Alignment:
Q  13 atcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatca 112  Q
    |||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| |||    
T  103484 atcataatagccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaatactataggacagtggtca 103385  T
Q  113 gataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat 212  Q
    ||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  103384 gataaacctcttaagtgtgccacctgaatgcagttgggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtccat 103285  T
Q  213 cccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctg 312  Q
    |||||||| ||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||    
T  103284 cccccttaaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactg 103185  T
Q  313 agaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg 407  Q
    ||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  103184 agatcctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacacaaaccttgttattccctaaagaaagcaacctcg 103090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 407
Target Start/End: Complemental strand, 4935759 - 4935375
Alignment:
Q  23 ccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctc 122  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| ||||    
T  4935759 ccaggcatatcttgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatctacagacaaaactataggacagtgatcagataaacctc 4935660  T
Q  123 ttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttata 222  Q
     ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |    
T  4935659 gtaaatgtgccacctgaatgcagttcggccacaccagacaccattcttcagaaagcaagaacctatccaatctactcatcgaacgaccatcccccttaaa 4935560  T
Q  223 ccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccccta 322  Q
    |||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||    
T  4935559 ccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactgagaacctcta 4935460  T
Q  323 accgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg 407  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  4935459 accgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg 4935375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 29970479 - 29970868
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||||| |||||||||||||| || ||||  ||||||| ||||||||| ||||||||||| ||||||||||| ||||| |  ||||| |||||||||||     
T  29970479 ataacctggcatatcttgccaacatttcaggagacgcaccggtctcggcccccaattctcctcatccacagacaacacaatgggacaatgatcagataaa 29970578  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
    |||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  29970579 cctcttaactgagctacctgaatgcaattaggccacaccatacaccattcttcagaaagcaagaacctatccaacctactcatcaaacgaccatccccct 29970678  T
Q  219 tataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaacc 318  Q
    |||||||||||||||| ||||||| || |||||  ||||||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  29970679 tataccaagtaaacttcctcccacttagcggtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgcacaatcagctaccacctgagaacc 29970778  T
Q  319 cctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcga 408  Q
    |||||| || ||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||    
T  29970779 cctaactgaccgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacctaaagaaagcaacctcga 29970868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 17723123 - 17723535
Alignment:
Q  2 tctcgaagaatatcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaag 101  Q
    ||||||| || ||||  ||||||||||||||||||||| || ||||| ||||||| ||| | |||||||||||||| |||||||||||  || || | ||    
T  17723123 tctcgaacaaaatcactataaccaggcatatcttgccaacatttcaaaagacgcaccggccgcggaccccaattcttttcatccacagtcaagacaatag 17723222  T
Q  102 gacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcat 201  Q
    | || |||||||||||||||||||| || || |||||||  ||| ||||||||||||  |||||||||||||| ||||||||||| |||||  |||||||    
T  17723223 ggcaatgatcagataatcctcttaactgagcaacctgaagacaagtaggccacaccatgcaccattcttcagatagcaagaacctgtccaatgtactcat 17723322  T
Q  202 cgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatca 301  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  17723323 cgaacggccatccccattataccaagtaaacttcctcccacataacggtaaattaattaaaactctatcttcaataaaatcattaaaaggtgcacaatca 17723422  T
Q  302 tcagccacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagca 401  Q
    ||| ||||||||||||||||||| || |||||||| || || |||||||| || ||||||||||| || |||||||||||  || | |||||||||||||    
T  17723423 tcaaccacctgagaacccctaacagagcgcctttcatcaactgaccgcacagtattaaaatccccacacacacaaaccttactactacctaaagaaagca 17723522  T
Q  402 acctcgatgaaag 414  Q
    ||||||| |||||    
T  17723523 acctcgaagaaag 17723535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 17058105 - 17058169
Alignment:
Q  101 ggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca 165  Q
    ||||| ||||||||||||||||  ||||||||||||||||| ||||| ||||||||||| |||||    
T  17058105 ggacaatgatcagataatcctcgcaattgtgccacctgaatacaattcggccacaccaagcacca 17058169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 262
Target Start/End: Original strand, 20658463 - 20658663
Alignment:
Q  62 ctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaac 161  Q
    ||||| ||||||||||| | ||| |||||||| |  || ||||| ||||| || || ||||| | ||| || |||||||||||||| ||||| || ||||    
T  20658463 ctcggcccccaattctccttatcaacagataaaatcaacggacaatgatctgacaaacctctaagttgcgcaacctgaatgcaattgggccaaactaaac 20658562  T
Q  162 accattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaa 261  Q
    |||| ||||  || |  || |||| ||| |  ||||||||||| | ||| ||||| ||  |||||||||| || |||||||| |||||||| ||||||||    
T  20658563 accactctttcgaaataaaaaaccgatcaattctactcatcgatcttccgtcccctttgaaccaagtaaaattactcccacacaacggtagatcaatcaa 20658662  T
Q  262 a 262  Q
    |    
T  20658663 a 20658663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 8773394 - 8773504
Alignment:
Q  64 cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac 163  Q
    |||||||||||| ||||||||||| || |  |  ||||||||||| | |||||| |||| ||| || || || ||||| ||||| |||||||| || |||    
T  8773394 cggaccccaattttcttcatccaccgacagaatcaaaggacagtggttagataaacctcgtaaatgagcgacttgaatacaattcggccacactaagcac 8773493  T
Q  164 cattcttcaga 174  Q
    || ||||||||    
T  8773494 caatcttcaga 8773504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 19917865 - 19917471
Alignment:
Q  21 aaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcc 120  Q
    |||| |||||||||||| | |||||||| ||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||| ||||||||||| ||    
T  19917865 aacccggcatatcttgctaacacttcaacagacgcaccggtctcggaccccagttctcttcatccacagacaatactataggacaatgatcagataagcc 19917766  T
Q  121 tcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctta 220  Q
    |||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  19917765 tcttaagtgtgccacctgaacacaattaggccacaccaaacaccaatcttcagagagcaagaacctatccaacctactcatcgaacggccattcccctta 19917666  T
Q  221 taccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaacccc 320  Q
     ||||||||||||| ||||||||||||||||  ||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||| |||||||||||    
T  19917665 aaccaagtaaacttcctcccacataacggtaaatcaatcaagcctctatcttcaataaagtcattaaaaggtgcacaatcctctaccaactgagaacccc 19917566  T
Q  321 taaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgatgaaagt 415  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| ||||||    
T  19917565 taaccgaacgcctttcttcaacagaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagagagtaacctcgaagaaagt 19917471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 120 - 407
Target Start/End: Original strand, 2366815 - 2367102
Alignment:
Q  120 ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt 219  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  2366815 ctcttaagtgtgccacctgaatgcagttaggccacaccaaacaccattcttcagagagcaagaacctatccaatctactcatcgagcgtccatccccctt 2366914  T
Q  220 ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc 319  Q
    | ||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||     
T  2366915 aaaccaagtaaacttcctcccacataatggtaaatcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatccaccaactgagaacct 2367014  T
Q  320 ctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg 407  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2367015 ctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg 2367102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 10620258 - 10620147
Alignment:
Q  59 ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca 158  Q
    ||||||||||||||||| || ||||||||||| || || |||||| | |||||  |||||||||| || || || |  || | |||||||||||||| ||    
T  10620258 ggtctcggaccccaattttcctcatccacagacaaaaccaaaggataatgatccaataatcctctcaactgcgcaatttgtaagcaattaggccacaaca 10620159  T
Q  159 aacaccattctt 170  Q
    ||||||| ||||    
T  10620158 aacaccactctt 10620147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 21738454 - 21738319
Alignment:
Q  116 aatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccc 215  Q
    ||||||||||| || ||||||||||   |||||||||||  ||||| |||||| || || | ||| ||||  || |||| ||||||||| |  |||||||    
T  21738454 aatcctcttaactgagccacctgaagaaaattaggccacctcaaaccccattcctccgaaatcaaaaaccggtctaaccgactcatcgacctaccatccc 21738355  T
Q  216 ccttataccaagtaaactttctcccacataacggta 251  Q
    | ||  |||||||||| ||||  |||||||||||||    
T  21738354 ctttgaaccaagtaaattttcggccacataacggta 21738319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 407
Target Start/End: Original strand, 47421313 - 47421697
Alignment:
Q  23 ccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctc 122  Q
    ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||    
T  47421313 ccaggcatatcgtgccaacacttcaacagacgcaccggtctcggaccccaattctcttcatccacagacaaaactataggacagtgatcagataaacctc 47421412  T
Q  123 ttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttata 222  Q
     ||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||| |    
T  47421413 gtaaatgtgccacctgaatgcagttcggccacaccatacaccattcttcagaaagcaagaacctgtccaatctactcatcgaacgaccatcccccttaaa 47421512  T
Q  223 ccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccccta 322  Q
    |||||||||||| ||||||||||| ||||  ||||||||||| ||||||||||||||||||| ||| ||||||||||||||  ||| ||||||||| |||    
T  47421513 ccaagtaaacttcctcccacataaaggtaaatcaatcaaaaccctatcttcaataaaatcatgaaagggtgcacaatcatccaccaactgagaacctcta 47421612  T
Q  323 accgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcg 407  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  47421613 accgaacgcctttcttcgactgaccgcacagtgttgaaatccccacaaacacaaaccttgttattccctaaagaaagcaacctcg 47421697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 176 - 407
Target Start/End: Original strand, 45716483 - 45716714
Alignment:
Q  176 agcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaa 275  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||    
T  45716483 agcaagaacctatccaatctactcatcgagcgtccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaactctatcttcaa 45716582  T
Q  276 taaaatcattaaaaggtgcacaatcatcagccacctgagaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacaca 375  Q
    ||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  45716583 taaaatcattaaaaggtgcacaatcatccaccaactgagaacctctaaccgaacgcctttcttcgactgaccgcacagtgttgaaatccccgcaaacaca 45716682  T
Q  376 aacctttttattccctaaagaaagcaacctcg 407  Q
    |||||| |||||||||||||||||||||||||    
T  45716683 aaccttgttattccctaaagaaagcaacctcg 45716714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 23240880 - 23241282
Alignment:
Q  13 atcaaaataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatca 112  Q
    ||||| |||||| |||||||||||||| || ||||  ||||||| ||||||||| ||||||||||||||||||||||| ||||  |  ||||| ||||||    
T  23240880 atcaatataacctggcatatcttgccaacatttcagaagacgcaccggtctcggcccccaattctcttcatccacagacaacaaaatgggacaatgatca 23240979  T
Q  113 gataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat 212  Q
    |||||||||||||| || || ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||| || ||||    
T  23240980 gataatcctcttaactgagctacctgaatgcaattaggccacaccatacaccattctacagaaagcaagaacctatccaacctcctcatcgagcgaccat 23241079  T
Q  213 cccccttataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctg 312  Q
    |||||||| ||||||||||||| ||||||| |||| |||  ||||||||||||| ||||||||||||||||||||||||||  ||||||||  |||||||    
T  23241080 cccccttaaaccaagtaaacttcctcccacttaacagtaaatcaatcaaaactcgatcttcaataaaatcattaaaaggtgtgcaatcatctaccacctg 23241179  T
Q  313 agaacccctaaccgaacgcctttcttcgacagaccgcaccgtgttaaaatccccgcaaacacaaacctttttattccctaaagaaagcaacctcgatgaa 412  Q
     |||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||||||||| |||    
T  23241180 ggaacccctaaccgaacgcctttcttcaactgaccgcacagtgttaaaatctccacaaacacaaaccttattattacataaagaaagcaacctcgacgaa 23241279  T
Q  413 agt 415  Q
    |||    
T  23241280 agt 23241282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 33172164 - 33172476
Alignment:
Q  20 taaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatc 119  Q
    ||||||||||| || ||| |||| ||||| |  ||||  |||||||| |||||||| | |||||| || || || |  | |||||| ||||| || |  |    
T  33172164 taaccaggcatgtcctgctagcatttcaacaaccgcaaaggtctcggcccccaattttgttcatcaactgacaataaaataggacaatgatccgagagcc 33172263  T
Q  120 ctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccctt 219  Q
    | ||||| || || |||||||| ||||||||||| | |  |||||| |||||||||||||| ||||| ||||| | |||||||||||| ||||| || ||    
T  33172264 cccttaactgagctacctgaatacaattaggccataactgacaccactcttcagagagcaaaaacctgtccaaacgactcatcgaacgcccatctccttt 33172363  T
Q  220 ataccaagtaaactttctcccacataacggtaggtcaatcaaaactctatcttcaataaaatcattaaaaggtgcacaatcatcagccacctgagaaccc 319  Q
     ||||| || |||||||  ||||  |  ||||  ||||  ||||| |  || ||||||||||||||||| |||||| ||||||| || |||||||| ||     
T  33172364 gtaccacgtgaactttcgaccacccagaggtaaatcaactaaaacacactcatcaataaaatcattaaacggtgcataatcatctgcaacctgagaccct 33172463  T
Q  320 ctaaccgaacgcc 332  Q
    | |||||||||||    
T  33172464 cgaaccgaacgcc 33172476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 25855074 - 25854848
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||||||||||| |||||||| || ||||  ||||||| ||| ||||| |||||||| |||||||| || || ||||| |   |||| |||||||| |      
T  25855074 ataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacgacctgacaatgatcagacaga 25854975  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
    || |  |  || || ||||| || |||||||||||||||| ||||||  |||| || | |||||| ||||||||||| |||||| | || ||||||||||    
T  25854974 ccccgaagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcaaccgcccatccccct 25854875  T
Q  219 tataccaagtaaactttctcccacata 245  Q
    || ||||||| || || | ||||||||    
T  25854874 taaaccaagtgaatttccgcccacata 25854848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 17603969 - 17603755
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||||||||||| ||||||||||| ||||  ||||||| ||| ||||  ||| |||| |||||||| || || ||||| |  ||||| |||||||| |      
T  17603969 ataaccaggcatgtcttgccagcatttcagaagacgcaacggcctcgt-ccctaattttcttcatctactgacaacacaatcggacaatgatcagacaga 17603871  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
     | ||||| || || ||||| || | ||||||||||| || ||||||  |||| || | ||  |||||||||||||||||||||||||| ||||||||||    
T  17603870 acccttaaatgagcaacctgcatactattaggccacaacagacaccaaccttctgacaacacaaacctatccaacctactcatcgaacgcccatccccct 17603771  T
Q  219 tataccaagtaaactt 234  Q
    || |||||||||||||    
T  17603770 taaaccaagtaaactt 17603755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 17555809 - 17555600
Alignment:
Q  19 ataaccaggcatatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataat 118  Q
    |||||||||||| |||||||| || ||||  ||||||| ||| ||||| |||||||| |||||||| || || ||||| |  ||||| |||||||| |      
T  17555809 ataaccaggcatgtcttgccaacatttcagaagacgcaacggcctcggtccccaattttcttcatctactgacaacacaaccggacaatgatcagacaga 17555710  T
Q  119 cctcttaattgtgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatccccct 218  Q
    || | ||  || || ||||| || |||||||||||||||| ||||||  |||| || | |||||| ||||||||||| |||||||| |  ||||||||||    
T  17555709 ccccgtagatgagcaacctgcatacaattaggccacaccagacaccaaccttctgacaacaagaatctatccaacctgctcatcgaccacccatccccct 17555610  T
Q  219 tataccaagt 228  Q
    || |||||||    
T  17555609 taaaccaagt 17555600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 18680151 - 18680081
Alignment:
Q  143 caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatc 213  Q
    ||||||||||| | |||||||||||||| ||||||||| ||||| |||| ||||||||| ||||| |||||    
T  18680151 caattaggccataacaaacaccattcttaagagagcaaaaacctgtccagcctactcattgaacgcccatc 18680081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 9666592 - 9666456
Alignment:
Q  68 ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt 167  Q
    |||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || ||||||||||||||||||||||||  ||||| |||||    
T  9666592 ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt 9666493  T
Q  168 cttcagagagcaagaacctatccaacctactcatcga 204  Q
    | ||||||| ||| ||||  ||||| | |||||||||    
T  9666492 cctcagagatcaaaaaccggtccaaacgactcatcga 9666456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 28398140 - 28398030
Alignment:
Q  64 cggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacac 163  Q
    |||||||||||| ||||||||||| || |  |  ||||||||||| |||||||| ||||  || || || || ||||| ||||| |||||||| || |||    
T  28398140 cggaccccaattttcttcatccaccgacagaatcaaaggacagtggtcagataaacctcgcaaatgagcgacttgaatacaatttggccacactaagcac 28398041  T
Q  164 cattcttcaga 174  Q
    || ||||||||    
T  28398040 cagtcttcaga 28398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 39432840 - 39432976
Alignment:
Q  68 ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt 167  Q
    |||||||| || ||||||||||| | ||| || ||||| ||||| || || |||||||| || ||||||||||||||||||||||||  ||||| | |||    
T  39432840 ccccaattttcctcatccacagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccctatt 39432939  T
Q  168 cttcagagagcaagaacctatccaacctactcatcga 204  Q
    | ||||||| ||| ||||  ||||| | |||||||||    
T  39432940 cctcagagatcaaaaaccggtccaaacgactcatcga 39432976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 9137748 - 9137930
Alignment:
Q  30 tatcttgccagcacttcaatagacgcagcggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattg 129  Q
    |||||||||| || ||||| |||||||  || | ||| ||||||||||| | ||| ||||| ||| | | |||||| ||||||||||| || ||||| ||    
T  9137748 tatcttgccaacatttcaagagacgcacaggacgcggcccccaattctcattatcaacagacaactcgataggacaatgatcagataaaccccttaaatg 9137847  T
Q  130 tgccacctgaatgcaattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccat 212  Q
     ||  ||||||  ||||| ||||||| || |||||||||| | || ||||  ||||| ||||| |||||||||||||| ||||    
T  9137848 agcagcctgaacacaatttggccacaacagacaccattctcctgaaagcagaaacctgtccaatctactcatcgaacgaccat 9137930  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 20798186 - 20798294
Alignment:
Q  68 ccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacaccatt 167  Q
    |||||||| || ||||||| ||| | ||| || ||||| ||||| || || |||||||| || ||||||||||||||||||||||||  ||||| |||||    
T  20798186 ccccaattttcctcatccaaagacagcaccaacggacaatgatccgacaaacctcttaactgagccacctgaatgcaattaggccacttcaaaccccatt 20798285  T
Q  168 cttcagaga 176  Q
    | |||||||    
T  20798286 cctcagaga 20798294  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 21412851 - 21412909
Alignment:
Q  107 tgatcagataatcctcttaattgtgccacctgaatgcaattaggccacaccaaacacca 165  Q
    |||||| |||||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  21412851 tgatcatataatcctctcaattgtgccacctgaatacaattcggccacaccaagcacca 21412909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 22189377 - 22189271
Alignment:
Q  59 ggtctcggaccccaattctcttcatccacagataacactaaaggacagtgatcagataatcctcttaattgtgccacctgaatgcaattaggccacacca 158  Q
    ||||| ||||||||||| || ||||| || || || |  || ||||| ||||||||||||||||  ||||| ||||||||||| ||||| ||||||||||    
T  22189377 ggtcttggaccccaattttcctcatcaactgacaaaagcaagggacaatgatcagataatcctcgcaattgagccacctgaatacaattcggccacacca 22189278  T
Q  159 aacacca 165  Q
    | |||||    
T  22189277 agcacca 22189271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 47620586 - 47620478
Alignment:
Q  143 caattaggccacaccaaacaccattcttcagagagcaagaacctatccaacctactcatcgaacgtccatcccccttataccaagtaaactttctcccac 242  Q
    ||||| ||||||| || |||||||||| | || ||||| ||  | ||||| |||||||||||||| |||| ||||||  ||||||| ||||| |  ||||    
T  47620586 caatttggccacaacagacaccattctcccgaaagcaaaaatttgtccaatctactcatcgaacgaccattccccttgaaccaagtgaacttccgaccac 47620487  T
Q  243 ataacggta 251  Q
    | |||||||    
T  47620486 acaacggta 47620478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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