View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_283 (Length: 229)

Name: NF8606A_low_283
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_283
NF8606A_low_283
[»] chr7 (4 HSPs)
chr7 (9-229)||(1077988-1078208)
chr7 (10-59)||(3927063-3927112)
chr7 (9-65)||(24723357-24723413)
chr7 (9-81)||(39298980-39299052)
[»] chr3 (29 HSPs)
chr3 (9-229)||(12133100-12133320)
chr3 (9-81)||(2442042-2442114)
chr3 (9-83)||(4142108-4142182)
chr3 (9-82)||(2696707-2696780)
chr3 (9-58)||(3754603-3754652)
chr3 (9-57)||(2492085-2492133)
chr3 (9-81)||(7942488-7942560)
chr3 (9-72)||(989399-989462)
chr3 (9-60)||(4157941-4157992)
chr3 (9-71)||(9608330-9608392)
chr3 (9-70)||(968674-968735)
chr3 (9-57)||(771499-771547)
chr3 (9-69)||(1940567-1940627)
chr3 (9-57)||(2456252-2456300)
chr3 (9-57)||(2644362-2644410)
chr3 (9-57)||(2659152-2659200)
chr3 (9-85)||(13498227-13498303)
chr3 (9-60)||(803215-803266)
chr3 (9-60)||(1007464-1007515)
chr3 (9-60)||(1022492-1022543)
chr3 (9-72)||(1931139-1931202)
chr3 (17-60)||(7432051-7432094)
chr3 (9-57)||(754609-754657)
chr3 (9-65)||(768321-768377)
chr3 (9-81)||(783775-783847)
chr3 (9-81)||(1891040-1891112)
chr3 (9-57)||(2631360-2631408)
chr3 (9-57)||(7324431-7324479)
chr3 (9-73)||(7398163-7398227)
[»] scaffold0044 (1 HSPs)
scaffold0044 (10-81)||(89147-89218)
[»] chr5 (4 HSPs)
chr5 (9-83)||(11081816-11081890)
chr5 (9-60)||(1427690-1427741)
chr5 (9-60)||(23766859-23766910)
chr5 (9-60)||(23816707-23816758)
[»] chr6 (3 HSPs)
chr6 (7-69)||(370773-370835)
chr6 (12-65)||(1442100-1442153)
chr6 (10-55)||(9819831-9819876)
[»] chr2 (5 HSPs)
chr2 (16-78)||(6538844-6538906)
chr2 (9-80)||(7156169-7156240)
chr2 (9-72)||(11237696-11237759)
chr2 (9-59)||(7160752-7160802)
chr2 (8-80)||(7168667-7168739)
[»] chr4 (1 HSPs)
chr4 (8-72)||(22672112-22672176)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 1078208 - 1077988
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctatatatagtgtatttggtgagccaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1078208 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctaaatatagtgtatttggtgagccaa 1078109  T
Q  109 tatatatttttgaggataatcaattgctgctcaagtttccaaggtatttaaatttgaagttgattcatttaaggaatggtacttttacatccactagatt 208  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  1078108 tatatatttttgaggataatcaagtgctgctgaagtttccaaggtatttaaatttgaagttgattgattcaaggaatggtacttttacatctactggatt 1078009  T
Q  209 taataacaccccagaaatctg 229  Q
    |||||||||||||||||||||    
T  1078008 taataacaccccagaaatctg 1077988  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  10 tttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 59  Q
    |||||||||||||||| |||||||||| | | || |||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 24723357 - 24723413
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 65  Q
    |||||| ||||||||||||||  |||||| || || ||||||||||||||| |||||    
T  24723357 gtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgtt 24723413  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 39298980 - 39299052
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    ||||||||| ||||||| | |||||||| |||||| ||||||||||| | || |||| |||||| || |||||    
T  39298980 gtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatc 39299052  T

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Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 12133100 - 12133320
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctatatatagtgtatttggtgagccaa 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||     
T  12133100 gtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttataggggagatcctatacttagtgtaattggtgagccat 12133199  T
Q  109 tatatatttttgaggataatcaattgctgctcaagtttccaaggtatttaaatttgaagttgattcatttaaggaatggtacttttacatccactagatt 208  Q
    |||||||||||||||||||| || ||||||| ||||||||  ||||||| |  |||||||||||| ||| ||| ||||||||| ||||||| |||  |||    
T  12133200 tatatatttttgaggataataaagtgctgctgaagtttcctgggtattttatattgaagttgattgattcaagtaatggtactattacatctactgaatt 12133299  T
Q  209 taataacaccccagaaatctg 229  Q
    | || ||| ||||||| ||||    
T  12133300 ttatgacagcccagaagtctg 12133320  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 2442042 - 2442114
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    |||||| ||||||||||||||||||||| ||| || |||||||||||||||| | |||||| ||||| |||||    
T  2442042 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatc 2442114  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 4142182 - 4142108
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 83  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||||||||| | || |||||| | ||||||||    
T  4142182 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 4142108  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 2696780 - 2696707
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcc 82  Q
    |||||| |||||||||| |||||||||| |||||| |||| ||||||||||| ||| ||||||| || ||||||    
T  2696780 gtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcactgtatcttacatggaagatcc 2696707  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 3754603 - 3754652
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgtt 58  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  3754603 gtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2492085 - 2492133
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  2492085 gtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 7942488 - 7942560
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    |||||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||| |||||| || |||||    
T  7942488 gtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 989399 - 989462
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 72  Q
    |||||||| ||||| ||||| ||||||| |||||| |||||||||||||||| | |||||||||    
T  989399 gtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttaca 989462  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 4157992 - 4157941
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||| |||||||||| |||||||||| |||||| ||||||||||||||||    
T  4157992 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4157941  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 9608392 - 9608330
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttac 71  Q
    ||||||||||||||||| |||||||||| ||| || ||||||||||| | || ||||||||||    
T  9608392 gtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtttcttac 9608330  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 968674 - 968735
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctta 70  Q
    |||||||||||||||||  ||||||||| |||||| ||||||||||| |||| | |||||||    
T  968674 gtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 771547 - 771499
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||||    
T  771547 gtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 1940627 - 1940567
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 69  Q
    |||||||||||||||||  ||||||||  ||| ||||||||||||||||||| | ||||||    
T  1940627 gtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttctt 1940567  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2456252 - 2456300
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||||    
T  2456252 gtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 2644410 - 2644362
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  2644410 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 2659200 - 2659152
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  2659200 gtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 13498227 - 13498303
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcctat 85  Q
    |||||| |||||||||| |||||||||| |||||| ||||||||||| | |||| | ||||| | ||||| ||||||    
T  13498227 gtttggattatgaaggaatatggaaataaagagtcttggactaaattatacaatatctcttatatgggagttcctat 13498303  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 803266 - 803215
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||||||||||| || |||||||||| |||||| |||||||| |||||||    
T  803266 gtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttca 803215  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 1007464 - 1007515
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||||| |||||||| ||||||||||  ||||| ||||||||||||||||    
T  1007464 gtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttca 1007515  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 1022492 - 1022543
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||||| |||||||| ||||||||||  ||||| ||||||||||||||||    
T  1022492 gtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttca 1022543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 1931202 - 1931139
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 72  Q
    ||||||||||||| |||  ||||||||| ||| || |||||||||||||||| | |||||||||    
T  1931202 gtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttaca 1931139  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 7432094 - 7432051
Alignment:
Q  17 tatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||    
T  7432094 tatgaaggaatatggaaataaagaatcgtggactaaattgttca 7432051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 754657 - 754609
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| ||||||||||||||||| ||  |||||| |||||||||||||    
T  754657 gtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 768377 - 768321
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 65  Q
    |||||| ||||||| ||||| ||||||  |||||| ||||||||||||||| |||||    
T  768377 gtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgtt 768321  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 783847 - 783775
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    |||||| |||||||||| |||||||||| | || | |||||||||||||  | |||| |||||| ||||||||    
T  783847 gtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 1891112 - 1891040
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    |||||| ||||||||||  ||||||||| ||| || |||||||||||||  | ||||||||||| | ||||||    
T  1891112 gtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatgcgagatc 1891040  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2631360 - 2631408
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| |||||||||| |||||||||  |||||| |||||||||||||    
T  2631360 gtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 7324479 - 7324431
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 57  Q
    |||||| |||||||||| || ||||||| |||||| |||||||||||||    
T  7324479 gtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 7398227 - 7398163
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacag 73  Q
    |||||| | ||||||||||||||||||  |||||| |||| |||||||||   ||||||||||||    
T  7398227 gtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgttttgtgtttcttacag 7398163  T

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Target: scaffold0044 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  10 tttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 81  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||| |||||| || |||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 11081816 - 11081890
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 83  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| | | || |||||| | ||||||||    
T  11081816 gtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatgagagatcct 11081890  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 1427741 - 1427690
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||||||||||| ||||||||||||| |||||| |||| |||| ||||||    
T  1427741 gtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttca 1427690  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 23766910 - 23766859
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||| ||||||| || |||||||||| |||||| ||||||||||||||||    
T  23766910 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23766859  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 23816758 - 23816707
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttca 60  Q
    |||||| ||||||| || |||||||||| |||||| ||||||||||||||||    
T  23816758 gtttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23816707  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 370835 - 370773
Alignment:
Q  7 gcgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 69  Q
    ||||||||||||||||| | |||||||||| ||| || |||||||||||||||||| ||||||    
T  370835 gcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctt 370773  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1442153 - 1442100
Alignment:
Q  12 tgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 65  Q
    |||||||||||||| ||||||| || ||| || |||||||||||||||| ||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgttcactgtt 1442100  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  10 tttgggttatgaaggagtatggaaatagagagtcgtggactaaatt 55  Q
    ||||| |||||||||| |||||||||||||| || |||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 6538844 - 6538906
Alignment:
Q  16 ttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggag 78  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| ||||||| ||| |||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatgggag 6538906  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 7156240 - 7156169
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagat 80  Q
    |||||| ||||||||||||||||||||  ||| || ||| |||||||||||  |||| |||||| |||||||    
T  7156240 gtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 11237696 - 11237759
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 72  Q
    |||||| ||||| |||||||||||||||||||  | |||||||||||||||  |||| ||||||    
T  11237696 gtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttaca 11237759  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 7160802 - 7160752
Alignment:
Q  9 gtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 59  Q
    |||||| |||||||||||||||||||||  || || |||||||||||||||    
T  7160802 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 7168739 - 7168667
Alignment:
Q  8 cgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagat 80  Q
    ||||||| |||||||||| ||||||||||  || || |||||||||||||||   ||| |||||| |||||||    
T  7168739 cgtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 22672176 - 22672112
Alignment:
Q  8 cgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttaca 72  Q
    ||||||||| |||||||| ||||||||||  || || |||||||||||||||| | |||||||||    
T  22672176 cgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttaca 22672112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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