View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_287 (Length: 228)
Name: NF8606A_low_287
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_287 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43239057 - 43238834
Alignment:
| Q |
1 |
ataaaagttaaaacataatttaactgagaata-gagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattcttg |
99 |
Q |
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| T |
43239057 |
ataaaagttaaaacataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttg |
43238958 |
T |
|
| Q |
100 |
tcttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43238957 |
tcttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaa |
43238858 |
T |
|
| Q |
200 |
aacgcaaga-tttggtacacatat |
222 |
Q |
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||||||||| |||||||||||||| |
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| T |
43238857 |
aacgcaagagtttggtacacatat |
43238834 |
T |
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