View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_289 (Length: 227)
Name: NF8606A_low_289
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_289 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 9462211 - 9462349
Alignment:
| Q |
31 |
cagagagtagagtgaataattctgagatctcaaactaagatgattaacaactaatgaacttgaacaatt-----------------gtttattcatttaa |
113 |
Q |
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| T |
9462211 |
cagaaagtagagtgaataattctgagatctcaaactaagatgattaacaaataatcaacttgaacaattattaatgttgcttgcaggtttattcatttaa |
9462310 |
T |
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| Q |
114 |
ttaaaactgtagcacctgatgcagaaaactatgcagaag |
152 |
Q |
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| T |
9462311 |
ttaaaactgtagcacctgatgcagaaaactatgcagaag |
9462349 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 9462363 - 9462391
Alignment:
| Q |
178 |
gctcgctaagcgatcatttctgttatgac |
206 |
Q |
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| T |
9462363 |
gctcgctaagcgatcatttctgttatgac |
9462391 |
T |
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