View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_297 (Length: 225)
Name: NF8606A_low_297
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_297 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 19506319 - 19506528
Alignment:
| Q |
16 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
115 |
Q |
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| T |
19506319 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
19506418 |
T |
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| Q |
116 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatctatcatgtgggttcatctgttgggaatccagtgagatatgagagtctca |
215 |
Q |
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| T |
19506419 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcacgtaggttcatctgttgggaatccagtgagatatgagagtctca |
19506518 |
T |
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| Q |
216 |
gcgactactg |
225 |
Q |
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| T |
19506519 |
gagactactg |
19506528 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 36194326 - 36194258
Alignment:
| Q |
83 |
aagcagatccctgctgatatggtggtgaatgcaatgctagtggccatggtaagtcatgcaaatcaacct |
151 |
Q |
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| T |
36194326 |
aagcagataccagctgacatggtggtcaatgcaatgttagtggctatggtggctcatgcaaatcaacct |
36194258 |
T |
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