View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_3 (Length: 589)
Name: NF8606A_low_3
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 135 - 572
Target Start/End: Complemental strand, 40193601 - 40193164
Alignment:
| Q |
135 |
tctttattttctcttatctctatcatattatacacattttcggtgaataatcacatccaatgattcatcagcactaagatgtacaagatttatttcctnn |
234 |
Q |
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| T |
40193601 |
tctttatcttctcttatctctatcatatcatacacattttcggtgaataatcacatccaatgattcatcagcactaagatgtacaagatttatttcctaa |
40193502 |
T |
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| Q |
235 |
nnnnngatgttatcaacttttgcataataatttctacatgaattattcaactttttccaaaccccttccccacgaagcttgtaaattcttcttattcatg |
334 |
Q |
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| T |
40193501 |
aaaaagatgttatcaacttttgcataataatttctgcatgaattattcaactttttccaaaccccttccccacgaagcttgtaaattcttcttattcatg |
40193402 |
T |
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| Q |
335 |
gctgatattttttgaccgaaagacaacaatgttttttaatatttgtcgacgtaaatctttccgtcggcatgctaccttttacatgtatgtttcctttgtt |
434 |
Q |
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| T |
40193401 |
gctgatattttttgaccgcaagacaacaatgtttttttatatttgtcgacgtaaatctttccgtcggcatgctaccttttacatgtatgtttcctttgtt |
40193302 |
T |
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| Q |
435 |
gcttttgccttgtaaggatctatttggttgccatatgctacacactttatcttttcaaattttagggagggcatgcccactaaattaaaggtaaaagaga |
534 |
Q |
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| T |
40193301 |
gcttttgccttgtaaggatctatttggttgccatatgctacacactttatcttttcaaattttagggagggcatgcccactaaattaaaggtaaaagaga |
40193202 |
T |
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| Q |
535 |
aaataaataaataaagaggatccttgctggatatacta |
572 |
Q |
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| T |
40193201 |
aaaaaataaaataaagaggatccttgctggatatacta |
40193164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40193715 - 40193677
Alignment:
| Q |
1 |
ctttgacaatagatctaacatgaaggacatcaatgtaaa |
39 |
Q |
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| T |
40193715 |
ctttgacaatagatctaagatgaagtacatcaatgtaaa |
40193677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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