View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_300 (Length: 223)

Name: NF8606A_low_300
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_300
NF8606A_low_300
[»] chr5 (21 HSPs)
chr5 (33-207)||(37705497-37705671)
chr5 (70-155)||(37438301-37438386)
chr5 (168-207)||(17818340-17818379)
chr5 (161-207)||(6745463-6745508)
chr5 (161-207)||(26098128-26098175)
chr5 (161-207)||(2724283-2724329)
chr5 (161-207)||(6747699-6747744)
chr5 (161-207)||(36402169-36402214)
chr5 (41-150)||(37700916-37701026)
chr5 (166-207)||(21948424-21948464)
chr5 (159-207)||(18597035-18597082)
chr5 (161-207)||(20505686-20505731)
chr5 (161-207)||(31472457-31472503)
chr5 (161-207)||(41585579-41585624)
chr5 (162-207)||(696265-696310)
chr5 (162-207)||(1171098-1171142)
chr5 (163-207)||(6756882-6756926)
chr5 (162-207)||(10528937-10528981)
chr5 (163-207)||(12555757-12555802)
chr5 (162-207)||(34530559-34530603)
chr5 (162-206)||(11962287-11962331)
[»] chr4 (36 HSPs)
chr4 (70-158)||(16840263-16840351)
chr4 (162-207)||(24879426-24879471)
chr4 (162-207)||(24880890-24880935)
chr4 (162-207)||(47563203-47563248)
chr4 (160-207)||(40091257-40091304)
chr4 (161-207)||(5101360-5101405)
chr4 (161-207)||(14789272-14789317)
chr4 (41-119)||(16840376-16840454)
chr4 (161-207)||(24446501-24446546)
chr4 (161-207)||(36921337-36921382)
chr4 (161-207)||(49089000-49089045)
chr4 (161-206)||(4558595-4558640)
chr4 (161-206)||(11853853-11853898)
chr4 (162-207)||(14787274-14787318)
chr4 (161-206)||(15312605-15312650)
chr4 (162-207)||(22800705-22800749)
chr4 (162-207)||(37089212-37089256)
chr4 (162-207)||(38928024-38928068)
chr4 (162-206)||(15317246-15317290)
chr4 (162-207)||(3824447-3824493)
chr4 (161-207)||(16453752-16453797)
chr4 (161-207)||(18311214-18311260)
chr4 (161-207)||(18409191-18409237)
chr4 (161-207)||(22802576-22802621)
chr4 (165-207)||(36919432-36919473)
chr4 (161-207)||(53405582-53405627)
chr4 (162-207)||(2891736-2891780)
chr4 (162-207)||(6765291-6765335)
chr4 (161-206)||(8529557-8529601)
chr4 (162-207)||(9148684-9148727)
chr4 (162-207)||(16455670-16455714)
chr4 (162-207)||(16489637-16489681)
chr4 (161-206)||(16688793-16688837)
chr4 (161-206)||(18587255-18587299)
chr4 (161-206)||(47566777-47566822)
chr4 (162-206)||(15831435-15831478)
[»] chr7 (18 HSPs)
chr7 (161-207)||(24748990-24749036)
chr7 (162-207)||(31434892-31434937)
chr7 (161-207)||(443998-444045)
chr7 (169-207)||(25357333-25357371)
chr7 (161-207)||(44724978-44725023)
chr7 (162-206)||(30247259-30247303)
chr7 (161-207)||(7094300-7094344)
chr7 (161-207)||(37411964-37412011)
chr7 (161-207)||(4295780-4295825)
chr7 (160-206)||(7464363-7464408)
chr7 (161-207)||(13099316-13099361)
chr7 (161-207)||(42223556-42223601)
chr7 (161-206)||(25351640-25351684)
chr7 (161-206)||(25405702-25405746)
chr7 (162-207)||(27306076-27306120)
chr7 (161-206)||(44016513-44016558)
chr7 (161-206)||(44512362-44512407)
chr7 (171-207)||(9679460-9679495)
[»] chr6 (16 HSPs)
chr6 (161-207)||(10584368-10584414)
chr6 (162-207)||(3629711-3629755)
chr6 (162-207)||(9020354-9020398)
chr6 (162-207)||(13057615-13057659)
chr6 (162-206)||(13883762-13883806)
chr6 (160-207)||(15367454-15367500)
chr6 (161-207)||(3394793-3394838)
chr6 (161-207)||(17694700-17694745)
chr6 (162-207)||(3233567-3233611)
chr6 (162-207)||(13040188-13040232)
chr6 (161-206)||(19701756-19701801)
chr6 (161-206)||(25941957-25942001)
chr6 (162-206)||(3577338-3577381)
chr6 (162-207)||(15530003-15530050)
chr6 (162-206)||(25465754-25465797)
chr6 (162-206)||(31248544-31248587)
[»] chr2 (16 HSPs)
chr2 (161-207)||(22707594-22707640)
chr2 (161-207)||(21520533-21520578)
chr2 (161-207)||(22287180-22287225)
chr2 (162-207)||(7462789-7462834)
chr2 (162-207)||(17849483-17849528)
chr2 (162-207)||(19008006-19008051)
chr2 (162-207)||(23871184-23871229)
chr2 (162-206)||(17943823-17943867)
chr2 (160-207)||(17462723-17462769)
chr2 (161-207)||(6263992-6264037)
chr2 (161-207)||(11739420-11739465)
chr2 (165-207)||(27105168-27105209)
chr2 (161-207)||(45238841-45238886)
chr2 (162-207)||(22162869-22162913)
chr2 (162-207)||(43623423-43623467)
chr2 (162-206)||(33670817-33670860)
[»] chr1 (19 HSPs)
chr1 (161-207)||(50078634-50078680)
chr1 (160-207)||(18839978-18840024)
chr1 (161-207)||(6995539-6995584)
chr1 (168-206)||(21353203-21353241)
chr1 (161-207)||(28206911-28206956)
chr1 (161-207)||(41647311-41647356)
chr1 (162-207)||(4131221-4131266)
chr1 (162-207)||(13762231-13762275)
chr1 (162-207)||(39462912-39462956)
chr1 (161-207)||(14097814-14097859)
chr1 (161-207)||(16429343-16429388)
chr1 (161-207)||(25860251-25860297)
chr1 (161-207)||(31424861-31424906)
chr1 (162-207)||(2949079-2949123)
chr1 (161-206)||(9522013-9522057)
chr1 (162-207)||(18307499-18307543)
chr1 (162-207)||(31422706-31422750)
chr1 (162-207)||(39932470-39932514)
chr1 (167-207)||(11457327-11457366)
[»] chr3 (30 HSPs)
chr3 (162-207)||(53468295-53468340)
chr3 (161-207)||(29897526-29897572)
chr3 (162-207)||(1626525-1626570)
chr3 (162-207)||(27635497-27635542)
chr3 (162-207)||(39715838-39715883)
chr3 (162-207)||(51674608-51674653)
chr3 (161-207)||(3315056-3315101)
chr3 (162-207)||(1313777-1313822)
chr3 (162-207)||(24980082-24980126)
chr3 (162-207)||(36012199-36012243)
chr3 (162-207)||(53915338-53915382)
chr3 (160-207)||(1321854-1321899)
chr3 (162-206)||(3330177-3330221)
chr3 (176-207)||(29913818-29913849)
chr3 (161-207)||(42990674-42990718)
chr3 (164-207)||(47701522-47701564)
chr3 (161-207)||(18099009-18099054)
chr3 (161-207)||(22625828-22625873)
chr3 (162-207)||(25687998-25688044)
chr3 (161-207)||(32219458-32219504)
chr3 (161-207)||(43421259-43421304)
chr3 (162-206)||(4103736-4103778)
chr3 (161-206)||(6303599-6303643)
chr3 (161-206)||(10099923-10099967)
chr3 (161-206)||(10897293-10897337)
chr3 (162-207)||(15781249-15781293)
chr3 (162-207)||(18096740-18096784)
chr3 (162-207)||(45883313-45883357)
chr3 (162-206)||(10093923-10093966)
chr3 (162-206)||(10200805-10200848)
[»] scaffold0004 (1 HSPs)
scaffold0004 (161-207)||(80261-80306)
[»] chr8 (14 HSPs)
chr8 (159-207)||(25952966-25953013)
chr8 (161-207)||(14419034-14419079)
chr8 (157-207)||(15073158-15073207)
chr8 (161-207)||(35872300-35872345)
chr8 (161-207)||(41383110-41383155)
chr8 (162-207)||(183266-183310)
chr8 (162-207)||(14808207-14808252)
chr8 (162-207)||(27106747-27106791)
chr8 (161-207)||(27827436-27827480)
chr8 (161-207)||(14477696-14477741)
chr8 (161-207)||(15068428-15068473)
chr8 (162-207)||(27829747-27829790)
chr8 (161-207)||(37214108-37214153)
chr8 (162-206)||(25684929-25684972)
[»] scaffold0005 (2 HSPs)
scaffold0005 (161-207)||(50413-50458)
scaffold0005 (162-207)||(52412-52456)
[»] scaffold1050 (1 HSPs)
scaffold1050 (161-206)||(2918-2962)
[»] scaffold0209 (1 HSPs)
scaffold0209 (161-206)||(16884-16928)
[»] scaffold0031 (1 HSPs)
scaffold0031 (162-207)||(79587-79631)
[»] scaffold0131 (1 HSPs)
scaffold0131 (162-206)||(17781-17824)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 37705497 - 37705671
Alignment:
Q  33 cccatgatatttaacattattgcattcgtagaactatattcaaactcacgacatctagttaagctgtaagagatctctttcgtcttaccgaagtaatctt 132  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37705497 cccatgatatttaacattattgcattcttagaactagattcaaactcacgacatctagttaagttgtaagagatcactttcgtcttaccgaagtaatctt 37705596  T
Q  133 gggttattttccgttgttttaatcaaacttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37705597 gggttattttccgttgttttaatcaaacttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgt 37705671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 37438301 - 37438386
Alignment:
Q  70 attcaaactcacgacatctagttaagctgtaagagatctctttcgtcttaccgaagtaatcttgggttattttccgttgttttaat 155  Q
    |||||||||||||||||||  ||| |||| ||||| || ||||| ||||||| || |||||||||||||||||  |||||||||||    
T  37438301 attcaaactcacgacatctgattaggctggaagaggtcactttcatcttacccaactaatcttgggttattttatgttgttttaat 37438386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 17818340 - 17818379
Alignment:
Q  168 gaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17818340 gaattcgatgagaaaaccacaccaataacaaacttgatgt 17818379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 6745508 - 6745463
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  6745508 ttgttgcgaattcgatgagaaaa-cacaccaataacaaacttgatgt 6745463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 26098128 - 26098175
Alignment:
Q  161 ttgttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  26098128 ttgttgcgaattcgatgagaaaactcacaccaatatcaaacttgatgt 26098175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 2724329 - 2724283
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||    
T  2724329 ttgttgcgaatttgatgaaaaaatcacaccaataacaaacttgatgt 2724283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 6747744 - 6747699
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  6747744 ttgttgcgaattggatgagaaaac-acaccaataacaaacttgatgt 6747699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 36402169 - 36402214
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  36402169 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 36402214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 37700916 - 37701026
Alignment:
Q  41 atttaacattattgcattcgtagaactatattcaaactcacgacatctagttaagctgtaagagatctctttcgtcttaccgaagtaatc-ttgggttat 139  Q
    |||||||||  ||||||||  | ||||  ||||||||||||||||||  ||||||||| |||| ||| ||||| ||||||  || ||||| |||||||||    
T  37700916 atttaacatggttgcattcccataactgaattcaaactcacgacatccggttaagctggaagatatcactttcatcttactcaaataatctttgggttat 37701015  T
Q  140 tttccgttgtt 150  Q
    ||||| |||||    
T  37701016 tttcccttgtt 37701026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 21948464 - 21948424
Alignment:
Q  166 gcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  21948464 gcgaattcgatgagaaaac-acaccaataacaaacttgatgt 21948424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 18597082 - 18597035
Alignment:
Q  159 acttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  18597082 acttgttgcaaattcgatga-aaaatcacaccaataacaaacttgatgt 18597035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 20505686 - 20505731
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||||    
T  20505686 ttgttgtgaattcaatgagaaaac-acaccaataacaaacttgatgt 20505731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 31472457 - 31472503
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||  |||||| ||||||||||||||||    
T  31472457 ttgttgcgaattcgatgaaaaatacacaccgataacaaacttgatgt 31472503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 41585579 - 41585624
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  41585579 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 41585624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 696310 - 696265
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| |||||||||||||||| || |||||||||| |||||||||    
T  696310 tgttgtgaattcgatgagaaaatcataccaataacagacttgatgt 696265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 1171142 - 1171098
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||    
T  1171142 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgt 1171098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 6756926 - 6756882
Alignment:
Q  163 gttgcgaattcgatgagaaaaccacaccaataac-aaacttgatgt 207  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||    
T  6756926 gttgcgaattcgatgagaaaa-cacaccaataacaaaacttgatgt 6756882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 10528937 - 10528981
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  10528937 tgttgtgaattcgatgagaaaatcacaccaataac-aacttgatgt 10528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 12555757 - 12555802
Alignment:
Q  163 gttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||    
T  12555757 gttgtgaattcgatgagaaaactcacaccaataacaaatttgatgt 12555802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 34530559 - 34530603
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  34530559 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 34530603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 11962287 - 11962331
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| || ||||||||||||||||| ||||||||||    
T  11962287 tgttgtgaattcgttgtgaaaaccacaccaataaaaaacttgatg 11962331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 16840351 - 16840263
Alignment:
Q  70 attcaaactcacgacatctagttaagctgtaagagatctctttcgtcttaccgaagtaatcttgggttattttccgttgttttaatcaa 158  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  16840351 attcaaactcacgacatctggttaagctggaagagatcactttcatcttacccaagtaatcatgggttattttccgttgttttaatcaa 16840263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 24879471 - 24879426
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24879471 tgttgtgaattcgatgaaaaaaccacaccaataacaaacttgatgt 24879426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 24880935 - 24880890
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24880935 tgttgtgaattcgatgaaaaaaccacaccaataacaaacttgatgt 24880890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 47563248 - 47563203
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  47563248 tgttgtgaatttgatgagaaaaccacaccaataacaaacttgatgt 47563203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 40091257 - 40091304
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  40091257 cttgttgcgaattcgatgaaaaattcacaccaataacaaacttgatgt 40091304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 5101405 - 5101360
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  5101405 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 5101360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14789272 - 14789317
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  14789272 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 14789317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 16840454 - 16840376
Alignment:
Q  41 atttaacattattgcattcgtagaactatattcaaactcacgacatctagttaagctgtaagagatctctttcgtctta 119  Q
    |||||||||| ||||||||  |||||   ||||||||||||| ||||| ||||||||| |||||||| ||||| |||||    
T  16840454 atttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta 16840376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 24446501 - 24446546
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24446501 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 24446546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 36921337 - 36921382
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  36921337 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 36921382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 49089045 - 49089000
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  49089045 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 49089000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 4558640 - 4558595
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  4558640 ttgttgtgaattcgttgagaaaaccacaccaataataaacttgatg 4558595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 11853898 - 11853853
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  11853898 ttgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatg 11853853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 14787274 - 14787318
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  14787274 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 14787318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 15312650 - 15312605
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  15312650 ttgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatg 15312605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 22800705 - 22800749
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  22800705 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 22800749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 37089212 - 37089256
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  37089212 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 37089256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 38928024 - 38928068
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  38928024 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 38928068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 15317290 - 15317246
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  15317290 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatg 15317246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 3824447 - 3824493
Alignment:
Q  162 tgttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  3824447 tgttgtgaattcgatgagaaaaatcacaccaataacaaacttgatgt 3824493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 16453797 - 16453752
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  16453797 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 16453752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 18311214 - 18311260
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| ||||||||||| |||||||||||    
T  18311214 ttgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgt 18311260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 18409191 - 18409237
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| ||||||||||| |||||||||||    
T  18409191 ttgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgt 18409237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 22802576 - 22802621
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  22802576 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 22802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 36919432 - 36919473
Alignment:
Q  165 tgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  36919432 tgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 36919473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 53405627 - 53405582
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||    
T  53405627 ttgttgcgaattcgatga-aaaatcacaccaataataaacttgatgt 53405582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 2891780 - 2891736
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  2891780 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 2891736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 6765335 - 6765291
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  6765335 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 6765291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 8529601 - 8529557
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  8529601 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 8529557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 9148727 - 9148684
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  9148727 tgttgcgaattcgatgagaaaa-cacaccaataac-aacttgatgt 9148684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 16455714 - 16455670
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  16455714 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 16455670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 16489681 - 16489637
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||    
T  16489681 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgt 16489637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 16688793 - 16688837
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  16688793 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 16688837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 18587299 - 18587255
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  18587299 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 18587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 47566822 - 47566777
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  47566822 ttgttgtgaattctttgagaaaaccacaccaataataaacttgatg 47566777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 15831478 - 15831435
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  15831478 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 15831435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 24749036 - 24748990
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  24749036 ttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgt 24748990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 31434892 - 31434937
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  31434892 tgttgcgaattcgatgagaaaatcacaccaataacaaacttgatgt 31434937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 444045 - 443998
Alignment:
Q  161 ttgttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  444045 ttgttgtgaattcgatgagaaaactcacaccaataacaaacttgatgt 443998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 25357371 - 25357333
Alignment:
Q  169 aattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25357371 aattcgttgagaaaaccacaccaataacaaacttgatgt 25357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 44725023 - 44724978
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  44725023 ttgttgcgaattcgatgggaaaac-acaccaataacaaacttgatgt 44724978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 30247303 - 30247259
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  30247303 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatg 30247259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 7094300 - 7094344
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||    
T  7094300 ttgttgcgaattcgatga--aaatcacaccaataacaaacttgatgt 7094344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 37411964 - 37412011
Alignment:
Q  161 ttgttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  37411964 ttgttgtgaatttgatgagaaaactcacaccaataacaaacttgatgt 37412011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 4295780 - 4295825
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  4295780 ttgttgcaaattcgatga-aaaatcacaccaataacaaacttgatgt 4295825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 7464363 - 7464408
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  7464363 cttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 7464408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 13099316 - 13099361
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  13099316 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 13099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 42223601 - 42223556
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  42223601 ttgttgcgaattcgataaaaaaac-acaccaataacaaacttgatgt 42223556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 25351684 - 25351640
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  25351684 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 25351640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 25405746 - 25405702
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  25405746 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 25405702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27306076 - 27306120
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||    
T  27306076 tgttgcgaattcgatgagagatc-acaccaataacaaacttgatgt 27306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 44016513 - 44016558
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| || ||||||||||||||||| ||||||||||    
T  44016513 ttgttgtgaattcgttgtgaaaaccacaccaataataaacttgatg 44016558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 44512362 - 44512407
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||| ||||||||||| ||||||||||    
T  44512362 ttgttgtgaattcgttgagaaaaacacaccaataaaaaacttgatg 44512407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 9679495 - 9679460
Alignment:
Q  171 ttcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9679495 ttcgatgagaaaac-acaccaataacaaacttgatgt 9679460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 10584414 - 10584368
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  10584414 ttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgt 10584368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 3629711 - 3629755
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3629711 tgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 3629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 9020398 - 9020354
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  9020398 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 9020354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13057659 - 13057615
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  13057659 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 13057615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 13883806 - 13883762
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  13883806 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatg 13883762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 15367500 - 15367454
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  15367500 cttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 15367454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 3394838 - 3394793
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||||    
T  3394838 ttgttgcgaattcgatgagaaaa-cacaccaataaaaatcttgatgt 3394793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 17694700 - 17694745
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||    
T  17694700 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgt 17694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 3233567 - 3233611
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||    
T  3233567 tgttgcgaattcgatgagaaaa-cacatcaataacaaatttgatgt 3233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13040232 - 13040188
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||    
T  13040232 tgttgcgaattcgatga-aaaatcacactaataacaaacttgatgt 13040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 19701756 - 19701801
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| || ||||||||||||||||| ||||||||||    
T  19701756 ttgttgtgaattcgttgtgaaaaccacaccaataataaacttgatg 19701801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 25942001 - 25941957
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  25942001 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 25941957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 3577338 - 3577381
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  3577338 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 3577381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 15530003 - 15530050
Alignment:
Q  162 tgttgcgaattcgatgagaaaacc--acaccaataacaaacttgatgt 207  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||||    
T  15530003 tgttgtgaattcgatgagaaaaactcacaccaataacaaacttgatgt 15530050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 25465754 - 25465797
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  25465754 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 25465797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 31248544 - 31248587
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  31248544 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 31248587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 22707594 - 22707640
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  22707594 ttgttgcgaattcgatgagaaaaccacaccaataacaaatttgatgt 22707640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 21520533 - 21520578
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21520533 ttgttgcgaattcgatgagaaaa-cacaccaataacaaacttgatgt 21520578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 22287180 - 22287225
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  22287180 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 22287225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 7462789 - 7462834
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||    
T  7462789 tgttgcgaattcgttgagaaaaccacatcgataacaaacttgatgt 7462834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 17849528 - 17849483
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  17849528 tgttgtgaattcgatgaaaaaatcacaccaataacaaacttgatgt 17849483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 19008051 - 19008006
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  19008051 tgttgtgaattcgatgaaaaaatcacaccaataacaaacttgatgt 19008006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 23871229 - 23871184
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||    
T  23871229 tgttgcaaattcgatgagaaaactacaccaataacaaatttgatgt 23871184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 17943867 - 17943823
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||    
T  17943867 tgttgtgaattcgttgagaaaaacacaccaataacaaacttgatg 17943823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 17462769 - 17462723
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  17462769 cttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgt 17462723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 6263992 - 6264037
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||    
T  6263992 ttgttgtgaattcgatgagaaaa-cacactaataacaaacttgatgt 6264037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 11739420 - 11739465
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  11739420 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 11739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 27105209 - 27105168
Alignment:
Q  165 tgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  27105209 tgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 27105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 45238841 - 45238886
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||    
T  45238841 ttgttgcgaattcgatga-aaaatcacaccaataataaacttgatgt 45238886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 22162869 - 22162913
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  22162869 tgttgcgaattcgatgagaaaa-cacaccaataacaattttgatgt 22162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 43623423 - 43623467
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||    
T  43623423 tgttgcgaattcgatga-aaaatcacaccaataactaacttgatgt 43623467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 33670817 - 33670860
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  33670817 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 33670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 50078634 - 50078680
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  50078634 ttgttgcgaattcgatgagaaaatcacaccaataacaaacttgatgt 50078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 18840024 - 18839978
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  18840024 cttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 18839978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 6995539 - 6995584
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  6995539 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 6995584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 21353203 - 21353241
Alignment:
Q  168 gaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21353203 gaattcgttgagaaaaccacaccaataacaaacttgatg 21353241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 28206911 - 28206956
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  28206911 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 28206956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 41647356 - 41647311
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41647356 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 41647311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 4131221 - 4131266
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||    
T  4131221 tgttgcgaattcgatgaaaaactcacaccaataacaaacttgatgt 4131266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13762275 - 13762231
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  13762275 tgttgcgaattcgatgagaaaatcacaccaataac-aacttgatgt 13762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 39462956 - 39462912
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  39462956 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 39462912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14097814 - 14097859
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  14097814 ttgttgcgaattcgaagaaaaaac-acaccaataacaaacttgatgt 14097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 16429388 - 16429343
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  16429388 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 16429343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 25860251 - 25860297
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||    
T  25860251 ttgttgtgaattcgttgtgaaaaccacaccaatatcaaacttgatgt 25860297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 31424861 - 31424906
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||    
T  31424861 ttgttgcgaattcaatga-aaaatcacaccaataacaaacttgatgt 31424906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 2949079 - 2949123
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  2949079 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 2949123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 9522057 - 9522013
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  9522057 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 9522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 18307543 - 18307499
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||    
T  18307543 tgttgcgaattcgatgagaaaa-tacatcaataacaaacttgatgt 18307499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 31422706 - 31422750
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||    
T  31422706 tgttgcgaattcgatga-aaaatcacatcaataacaaacttgatgt 31422750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 39932514 - 39932470
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||    
T  39932514 tgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 39932470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 11457327 - 11457366
Alignment:
Q  167 cgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  11457327 cgaattcgatga-aaaatcacaccaataacaaacttgatgt 11457366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 53468295 - 53468340
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  53468295 tgttgcaaattcgatgagaaaaccacaccaataacaaacttgatgt 53468340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 29897526 - 29897572
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  29897526 ttgttgtgaattcgttgagaaaaccacaccaataacaaacttgatgt 29897572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 1626525 - 1626570
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  1626525 tgttgcgaattccataagaaaaccacaccaataacaaacttgatgt 1626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27635497 - 27635542
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||    
T  27635497 tgttgcaaattcgatgagaaaatcacaccaataacaaacttgatgt 27635542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 39715883 - 39715838
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  39715883 tgttgtgaattcgatgagaaaaccgcaccaataacaaacttgatgt 39715838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 51674608 - 51674653
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||    
T  51674608 tgttgtgaattcgatgagaaaatcacaccaataacaaacttgatgt 51674653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 3315101 - 3315056
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  3315101 ttgttgcgaattcgatgagaaaa-cacaccaataataaacttgatgt 3315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 1313822 - 1313777
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||    
T  1313822 tgttgcgaattcgatgaaaaactcacaccaataacaaacttgatgt 1313777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 24980126 - 24980082
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24980126 tgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 24980082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 36012243 - 36012199
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  36012243 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 36012199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 53915338 - 53915382
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  53915338 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 53915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 1321899 - 1321854
Alignment:
Q  160 cttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||    
T  1321899 cttgttgcgaattcgatga--aaatcacaccaataacaaacttgatgt 1321854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 3330221 - 3330177
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||    
T  3330221 tgttgtgaattcgttgtgaaaaccacaccaataacaaacttgatg 3330177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 29913818 - 29913849
Alignment:
Q  176 tgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||||||||||||    
T  29913818 tgagaaaaccacaccaataacaaacttgatgt 29913849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 42990718 - 42990674
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||    
T  42990718 ttgttgcgaattcgatga--aaatcacaccaataacaaacttgatgt 42990674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 47701522 - 47701564
Alignment:
Q  164 ttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||| |||| |||||||||||||||||||||||    
T  47701522 ttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 47701564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 18099009 - 18099054
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  18099009 ttgttgggaattcgatga-aaaatcacaccaataacaaacttgatgt 18099054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 22625828 - 22625873
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||    
T  22625828 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgt 22625873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 25687998 - 25688044
Alignment:
Q  162 tgttgcgaattcgatgagaaaac-cacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||||||||| |||||||||||||||||| ||||    
T  25687998 tgttgcaaattcgatgagaaaactcacaccaataacaaactttatgt 25688044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 32219504 - 32219458
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  32219504 ttgttgtgaattcgatgaaaaaatcacacaaataacaaacttgatgt 32219458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 43421259 - 43421304
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||    
T  43421259 ttgttgcgaattcgatga-aaaatcacaccaataacaaagttgatgt 43421304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 4103736 - 4103778
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||    
T  4103736 tgttgcgaattcgatga--aaatcacaccaataacaaacttgatg 4103778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 6303643 - 6303599
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  6303643 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 6303599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 10099923 - 10099967
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  10099923 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 10099967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 10897337 - 10897293
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  10897337 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 10897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 15781293 - 15781249
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  15781293 tgttgtgaattcgatg-gaaaaacacaccaataacaaacttgatgt 15781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 18096740 - 18096784
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||    
T  18096740 tgttgcgaattcgatga-aaaattacaccaataacaaacttgatgt 18096784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 45883357 - 45883313
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||    
T  45883357 tgttgcaaattcgatga-aaaatcacaccaataacaaacttgatgt 45883313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 10093923 - 10093966
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  10093923 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 10093966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 10200805 - 10200848
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  10200805 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 10200848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 80306 - 80261
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  80306 ttgttgcgaattcgatgagaaaa-cacaccaataacaaacttgatgt 80261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 25953013 - 25952966
Alignment:
Q  159 acttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  25953013 acttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 25952966  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14419034 - 14419079
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14419034 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 14419079  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 15073207 - 15073158
Alignment:
Q  157 aaacttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  15073207 aaacatgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 15073158  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 35872300 - 35872345
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  35872300 ttgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 35872345  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 41383155 - 41383110
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  41383155 ttgttgcgagttcgatga-aaaaccacaccaataacaaacttgatgt 41383110  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 183310 - 183266
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  183310 tgttgtgaattcgatgagaaaac-acaccaataacaaacttgatgt 183266  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 14808252 - 14808207
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||    
T  14808252 tgttgcgcattcgatgaaaaaatcacaccaataacaaacttgatgt 14808207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27106747 - 27106791
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||    
T  27106747 tgttgcaaattcgatgagaaaac-acaccaataacaaacttgatgt 27106791  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 27827480 - 27827436
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||    
T  27827480 ttgttgcgaattcgatga--aaatcacaccaataacaaacttgatgt 27827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 14477741 - 14477696
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  14477741 ttgttgtgaattcgatga-aaaatcacaccaataacaaacttgatgt 14477696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 15068473 - 15068428
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  15068473 ttgttgcgaattcgatga-aaaatcacaccaacaacaaacttgatgt 15068428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 27829790 - 27829747
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||    
T  27829790 tgttgcgaattcgatga--aaatcacaccaataacaaacttgatgt 27829747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 37214108 - 37214153
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  37214108 ttgttgtgaatttgatgagaaaac-acaccaataacaaacttgatgt 37214153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 25684972 - 25684929
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  25684972 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 25684929  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 50458 - 50413
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  50458 ttgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 50413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 52456 - 52412
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  52456 tgttgcgaattcgatga-aaaatcacaccaataacaaacttgatgt 52412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 2918 - 2962
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  2918 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 2962  T

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Target: scaffold0209 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 16884 - 16928
Alignment:
Q  161 ttgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  16884 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 16928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 79631 - 79587
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatgt 207  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||    
T  79631 tgttgcgaattcaatga-aaaatcacaccaataacaaacttgatgt 79587  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 17824 - 17781
Alignment:
Q  162 tgttgcgaattcgatgagaaaaccacaccaataacaaacttgatg 206  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  17824 tgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatg 17781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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