View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_303 (Length: 221)
Name: NF8606A_low_303
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_303 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 7899279 - 7899482
Alignment:
| Q |
18 |
aatatagaagcttgaagacatgaattaagttgtgtggaacaatattctcgtcatttaacagaagcaaaattattccaaaaatctactttactgaatgctt |
117 |
Q |
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| T |
7899279 |
aatatagaagcttgaacacatgaattaagttgtgtggaacaatattctcgtcatttaacagaagcaaaattattccaaaaatctactttactgaatgctt |
7899378 |
T |
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| Q |
118 |
gatttgtaagatagaagtgtcattgcactagatgtatgccaaaaactccttgcacattaaccaactgaagccatgtgtcggatcaagtcaaccacgcgtg |
217 |
Q |
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| T |
7899379 |
gatttgtaagatagaagtgtcattgcactagatgtatgccaaaaactccttgcacattaaccaactgaagccatgtgtcggatcaagtcaaccacgcgtg |
7899478 |
T |
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| Q |
218 |
agct |
221 |
Q |
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|||| |
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| T |
7899479 |
agct |
7899482 |
T |
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