View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_304 (Length: 221)
Name: NF8606A_low_304
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_304 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 20816621 - 20816837
Alignment:
| Q |
1 |
aagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcgc |
100 |
Q |
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| T |
20816621 |
aagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctc |
20816720 |
T |
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| Q |
101 |
gccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttgg |
200 |
Q |
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| T |
20816721 |
gccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttgg |
20816820 |
T |
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| Q |
201 |
aagtgttgaattacttg |
217 |
Q |
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| T |
20816821 |
aagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 38779524 - 38779308
Alignment:
| Q |
1 |
aagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcgc |
100 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779524 |
aagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctt |
38779425 |
T |
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| Q |
101 |
gccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttgg |
200 |
Q |
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| T |
38779424 |
gccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgctttgg |
38779325 |
T |
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| Q |
201 |
aagtgttgaattacttg |
217 |
Q |
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||||||||||||||||| |
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| T |
38779324 |
aagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33388483 - 33388268
Alignment:
| Q |
1 |
aagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcgc |
100 |
Q |
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|||||| ||||| |||||||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388483 |
aagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatctt |
33388384 |
T |
|
| Q |
101 |
gccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttgg |
200 |
Q |
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|| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||| |
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| T |
33388383 |
gcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgctttgg |
33388284 |
T |
|
| Q |
201 |
aagtgttgaattactt |
216 |
Q |
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|||||||||||||||| |
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| T |
33388283 |
aagtgttgaattactt |
33388268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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