View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_31 (Length: 414)
Name: NF8606A_low_31
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 409
Target Start/End: Complemental strand, 41357534 - 41357123
Alignment:
| Q |
6 |
agcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctctat |
105 |
Q |
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| T |
41357534 |
agcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctctat |
41357435 |
T |
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| Q |
106 |
agcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacct |
197 |
Q |
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| T |
41357434 |
agcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacct |
41357335 |
T |
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| Q |
198 |
ctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctcca |
297 |
Q |
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| T |
41357334 |
ctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctcca |
41357235 |
T |
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| Q |
298 |
ttagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctatttg |
397 |
Q |
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| T |
41357234 |
ttagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctatttg |
41357135 |
T |
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| Q |
398 |
acgccactttgt |
409 |
Q |
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| T |
41357134 |
acgccactttgt |
41357123 |
T |
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