View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_316 (Length: 217)
Name: NF8606A_low_316
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_316 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 6915471 - 6915675
Alignment:
| Q |
11 |
gttggagcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa |
110 |
Q |
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| T |
6915471 |
gttggagcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa |
6915570 |
T |
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| Q |
111 |
attaaggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
210 |
Q |
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| T |
6915571 |
attaaggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
6915670 |
T |
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| Q |
211 |
catcc |
215 |
Q |
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| T |
6915671 |
catcc |
6915675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
159 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
214 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
47 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
109 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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