View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_320 (Length: 215)

Name: NF8606A_low_320
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_320
NF8606A_low_320
[»] chr3 (18 HSPs)
chr3 (15-103)||(19849354-19849442)
chr3 (15-101)||(20015873-20015959)
chr3 (28-101)||(19858429-19858502)
chr3 (33-101)||(20046480-20046548)
chr3 (50-101)||(17115073-17115124)
chr3 (32-97)||(24839666-24839731)
chr3 (29-101)||(19818920-19818992)
chr3 (21-97)||(19944078-19944154)
chr3 (22-106)||(19956439-19956523)
chr3 (22-101)||(20036282-20036361)
chr3 (140-193)||(19848795-19848848)
chr3 (35-95)||(19832235-19832295)
chr3 (138-190)||(19838195-19838247)
chr3 (138-190)||(19955886-19955938)
chr3 (138-193)||(26646818-26646873)
chr3 (138-196)||(19818362-19818420)
chr3 (138-191)||(26651843-26651896)
chr3 (138-190)||(19950935-19950987)
[»] chr5 (2 HSPs)
chr5 (15-101)||(9815394-9815480)
chr5 (15-101)||(26354599-26354685)
[»] chr7 (5 HSPs)
chr7 (50-99)||(12497567-12497616)
chr7 (50-99)||(12521432-12521481)
chr7 (33-101)||(12579781-12579849)
chr7 (33-100)||(12519486-12519553)
chr7 (51-101)||(12495703-12495753)
[»] chr4 (2 HSPs)
chr4 (44-101)||(6397440-6397497)
chr4 (144-184)||(6397999-6398039)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 19849442 - 19849354
Alignment:
Q  15 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 103  Q
    ||||| ||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19849442 aagaaaatcatccatagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggat 19849354  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 20015873 - 20015959
Alignment:
Q  15 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    ||||| |||||  ||||||||||||||  ||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  20015873 aagaaaatcatcaatagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagg 20015959  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 19858502 - 19858429
Alignment:
Q  28 atagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    ||||| ||||||||  ||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  19858502 atagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaagg 19858429  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 20046548 - 20046480
Alignment:
Q  33 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||||||||  ||||| ||||||| ||||||||||| || |||||||||||||| ||||||||||||||    
T  20046548 tgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagg 20046480  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 17115124 - 17115073
Alignment:
Q  50 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  17115124 taacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagg 17115073  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 24839666 - 24839731
Alignment:
Q  32 ctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 97  Q
    ||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || |||||||    
T  24839666 ctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaata 24839731  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 19818992 - 19818920
Alignment:
Q  29 tagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||| ||||||||  ||| ||||||||||||||||| |||||||||||| | |||||| |||||||| |||||    
T  19818992 tagccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagg 19818920  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 19944154 - 19944078
Alignment:
Q  21 atcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaata 97  Q
    |||||| |||||||| |||||  ||||||  |||||||||||||||||||||| ||| |||||||| || |||||||    
T  19944154 atcattgatagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaata 19944078  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 19956523 - 19956439
Alignment:
Q  22 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggattcc 106  Q
    |||| |||||| ||||||||  ||| |||||||||||||| | |||||| || |||||||||||| |||||||| ||||| ||||    
T  19956523 tcatccatagccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcc 19956439  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 20036282 - 20036361
Alignment:
Q  22 tcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||| |||||| ||||||||  ||| |||||||||||||||  |||||| || |||||||||||| |||||||| |||||    
T  20036282 tcatccatagccgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagg 20036361  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 19848848 - 19848795
Alignment:
Q  140 aaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 193  Q
    |||||||| |||||||||||| | |||||| |||||||||| ||||||||||||    
T  19848848 aaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggt 19848795  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 19832295 - 19832235
Alignment:
Q  35 agtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaa 95  Q
    |||||||  ||| ||||||||||||||||  |||||||| |||||||||||| ||||||||    
T  19832295 agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaa 19832235  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 19838247 - 19838195
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 190  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19838247 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19838195  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 19955938 - 19955886
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 190  Q
    |||||||||| ||| |||||||| | ||||||||||||||| |||||||||||    
T  19955938 aaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaa 19955886  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 26646873 - 26646818
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggt 193  Q
    |||||||||| ||||||||||||||  ||||| |||||||||| || |||||||||    
T  26646873 aaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggt 26646818  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 19818420 - 19818362
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaaggtgtt 196  Q
    ||||| |||| |||||||||||| |  |||||||||||||| ||||| |||||||||||    
T  19818420 aaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgtt 19818362  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 26651896 - 26651843
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaag 191  Q
    ||||| |||| |||||||||||| | ||||||||||||||| ||||| ||||||    
T  26651896 aaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaag 26651843  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 19950987 - 19950935
Alignment:
Q  138 aaaaccatgaaatcctccaaagtaagtgttgcctcaccaaagggaaacacaaa 190  Q
    |||||||| | |||||||||||| |  |||||||||||||| |||||||||||    
T  19950987 aaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaa 19950935  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 9815480 - 9815394
Alignment:
Q  15 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    ||||| ||||| |||||| ||||||||  ||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  9815480 aagaaaatcatccatagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagg 9815394  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 26354599 - 26354685
Alignment:
Q  15 aagaatatcattcatagctgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    ||||| |||||| |||||  |||||||  ||| | |||||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  26354599 aagaaaatcattgatagccaagtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagg 26354685  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 12497616 - 12497567
Alignment:
Q  50 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 99  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12497616 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12497567  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 12521481 - 12521432
Alignment:
Q  50 taacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaa 99  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||    
T  12521481 taacattgccaattttcaaggccagaaccttatgccacctcaacaataaa 12521432  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 12579781 - 12579849
Alignment:
Q  33 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12579781 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12579849  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 12519486 - 12519553
Alignment:
Q  33 tgagtctaagaccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaag 100  Q
    |||||||||  | ||| ||||||||||||||| ||||||||||||||||| | | |||| ||||||||    
T  12519486 tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaag 12519553  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 12495703 - 12495753
Alignment:
Q  51 aacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    |||||||||||||| ||||||||||||||||| | | |||| |||||||||    
T  12495703 aacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagg 12495753  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 6397440 - 6397497
Alignment:
Q  44 ccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaagg 101  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  6397440 ccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagg 6397497  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 6397999 - 6398039
Alignment:
Q  144 atgaaatcctccaaagtaagtgttgcctcaccaaagggaaa 184  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  6397999 atgatatcctccaaagttattgttgcctcaccaaagggaaa 6398039  T

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