View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_323 (Length: 212)
Name: NF8606A_low_323
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_323 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 30810489 - 30810322
Alignment:
| Q |
30 |
atcatttgttaaaagaaggactaatgaatattgaagatagaataagtaaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaacta |
127 |
Q |
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| T |
30810489 |
atcatttgttaaaagaaggactaatcaatattgaagatagaataagtaaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactt |
30810390 |
T |
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| Q |
128 |
tgtatt--tatataatatagtagatgaagaggggtagacatacacatttaatgtgaggggagattgtg |
193 |
Q |
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| T |
30810389 |
tgtatttatatataatatagtagatgaagagaggtagacatacacatttaatgtgaggggagattgtg |
30810322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 30820168 - 30820124
Alignment:
| Q |
31 |
tcatttgttaaaagaaggactaatgaatattgaagatagaataag |
75 |
Q |
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| T |
30820168 |
tcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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