View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_33 (Length: 403)
Name: NF8606A_low_33
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 383
Target Start/End: Complemental strand, 22362479 - 22362097
Alignment:
| Q |
4 |
ggagaagcaaacaagttggtcatggagaaagctcatgaaaaatgtattaggaaaagagaagaagaagatagagaataaagacagagctgattcccctgac |
103 |
Q |
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| T |
22362479 |
ggagaagcaaacaagttggtcatggaggaagctcatgaaaaatgtattaggaaaagagaagaagaagatagagaataaagacagagctgattcccctgac |
22362380 |
T |
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| Q |
104 |
tcttacaatctttatgatagaaaacctgatttccgaaatgcatatggttggagcagtgcattggatggtggcgattattctccgctcaaaatacctgata |
203 |
Q |
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| T |
22362379 |
tcttacaatctctatgatagaaaacctgatttccgaaatgcatatggttggagcagtgcattggatggtggcgattattctccgctcaaaatacctgata |
22362280 |
T |
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| Q |
204 |
tcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatct---tgctgggttcttattcatcttttctt |
300 |
Q |
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| T |
22362279 |
tcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatattgctgctgggttcttattcatcttttcta |
22362180 |
T |
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| Q |
301 |
tttcatgcgttgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagag |
383 |
Q |
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| T |
22362179 |
tttcatgcattgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccatagtattaagag |
22362097 |
T |
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