View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_336 (Length: 205)
Name: NF8606A_low_336
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_336 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 33430392 - 33430560
Alignment:
| Q |
17 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacgcaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
116 |
Q |
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| T |
33430392 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
33430491 |
T |
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| Q |
117 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctctgtt |
185 |
Q |
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| T |
33430492 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
33430560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 33435274 - 33435339
Alignment:
| Q |
120 |
tatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctctgtt |
185 |
Q |
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| T |
33435274 |
tatcactaagctatggagaagaaaacactagcaggcttatgcttcctcttcctcgttctctttgtt |
33435339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 11127657 - 11127598
Alignment:
| Q |
126 |
taagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctctgtt |
185 |
Q |
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| T |
11127657 |
taagccatggaaaagaaatcactagttgtcttgtgcttcctcttcctcgttctctttgtt |
11127598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 11384215 - 11384263
Alignment:
| Q |
132 |
atggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
180 |
Q |
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| T |
11384215 |
atggagaagaaatcactaccaggcttgtgtttcctcttcctcgttctct |
11384263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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